ggKbase home page

SCN18_10_11_15_R4_B_scaffold_1354

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_1354_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(181..1353)
DNA (1173bp) protein (391aa)
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein n=1 Tax=Ahrensia sp. R2A130 RepID=E0MPP8_9RHOB
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:EFL89008.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
amino acid binding protein
SCN18_10_11_15_R4_B_scaffold_1354_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1396..3291)
DNA (1896bp) protein (632aa)
AMP-binding enzyme n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EQJ8_9RHOB
Fatty-acid--CoA ligase {ECO:0000313|EMBL:KAJ02588.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
long-chain-fatty-acid-CoA ligase
SCN18_10_11_15_R4_B_scaffold_1354_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3305..4111)
DNA (807bp) protein (269aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6ATV5_9RHOB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KAJ02587.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF
SCN18_10_11_15_R4_B_scaffold_1354_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4108..4893)
DNA (786bp) protein (262aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LSB9_RUEPO
branched-chain amino acid ABC transporter, ATP-binding protein
Branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAV95128.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCN18_10_11_15_R4_B_scaffold_1354_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4890..5990)
DNA (1101bp) protein (367aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LSB8_RUEPO
branched-chain amino acid ABC transporter, permease protein
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AAV95129.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCN18_10_11_15_R4_B_scaffold_1354_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5994..6869)
DNA (876bp) protein (292aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CQK8_9RHOB
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EEX10749.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibacter lacuscaerulensis ITI-1157.;"
branched-chain amino acid ABC transporter, permease protein
SCN18_10_11_15_R4_B_scaffold_1354_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6964..8004)
DNA (1041bp) protein (347aa)
UPI0003D00E7A related cluster n=1 Tax=unknown RepID=UPI0003D00E7A
NADH oxidoreductase {ECO:0000313|EMBL:ESY88478.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
alcohol dehydrogenase GroES domain-containing protein
SCN18_10_11_15_R4_B_scaffold_1354_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8018..8986)
DNA (969bp) protein (323aa)
PREDICTED: quinone oxidoreductase-like protein 2 homolog n=1 Tax=Pantholops hodgsonii RepID=UPI0003C184BE
Possible zinc-containing alcohol dehydrogenase {ECO:0000313|EMBL:EAS48915.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
Zinc-containing alcohol dehydrogenase superfamily protein
SCN18_10_11_15_R4_B_scaffold_1354_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9168..10397)
DNA (1230bp) protein (410aa)
UPI0003CEDF3F related cluster n=1 Tax=unknown RepID=UPI0003CEDF3F
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ESY72402.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
acyl-CoA dehydrogenase domain-containing protein
SCN18_10_11_15_R4_B_scaffold_1354_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10403..11047)
DNA (645bp) protein (215aa)
Putative TetR-family transcriptional regulator n=1 Tax=Achromobacter piechaudii HLE RepID=J4YJ89_9BURK
HTH-type transcriptional repressor KstR2 {ECO:0000313|EMBL:CEJ15724.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
bacterial regulatory s, tetR family protein
SCN18_10_11_15_R4_B_scaffold_1354_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11201..12013
DNA (813bp) protein (271aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKC6_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHH03848.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
short chain dehydrogenase/reductase
SCN18_10_11_15_R4_B_scaffold_1354_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12022..12510
DNA (489bp) protein (163aa)
Nodulation protein NodN n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNC2_9RHIZ
Nodulation protein NodN {ECO:0000313|EMBL:EHK57756.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
nodulation protein NodN
SCN18_10_11_15_R4_B_scaffold_1354_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12507..13550
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNC1_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57755.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1354_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13552..14331
DNA (780bp) protein (260aa)
Oxidoreductase, short chain dehydrogenase/reductase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKC9_9RHIZ
Oxidoreductase, short chain dehydrogenase/reductase {ECO:0000313|EMBL:EHH03851.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
oxidoreductase, short chain dehydrogenase/reductase
SCN18_10_11_15_R4_B_scaffold_1354_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14691..15917)
DNA (1227bp) protein (409aa)
Oxalate/formate antiporter n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRR1_9RHIZ
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDX27110.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
major facilitator superfamily protein
SCN18_10_11_15_R4_B_scaffold_1354_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16113..16760
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI0003607A81
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY88848.1}; Flags: Precursor;; TaxID=251229 species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
SCN18_10_11_15_R4_B_scaffold_1354_17
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16769..17023)
DNA (255bp) protein (85aa)
Displaying 17 items

View Taxonomy