ggKbase home page

SCN18_10_11_15_R4_B_scaffold_2181

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_2181_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1008
DNA (1008bp) protein (336aa)
Porin omp2b n=2 Tax=Brucella suis RepID=N8IB89_BRUSS
ropA; Outer membrane protein IIIA
Putative porin {ECO:0000313|EMBL:BAD67159.1}; TaxID=255506 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. JM13/00.;"
SCN18_10_11_15_R4_B_scaffold_2181_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1300..2259
DNA (960bp) protein (320aa)
Integrase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y2Z9_9RHIZ
Integrase {ECO:0000313|EMBL:KFB10599.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
site-specific recombinase XerD
SCN18_10_11_15_R4_B_scaffold_2181_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2560..3258
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXX1_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94615.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_2181_4
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3460..4572
DNA (1113bp) protein (371aa)
Histidinol-phosphate aminotransferase {ECO:0000313|EMBL:ESW83127.1}; EC=2.6.1.9 {ECO:0000313|EMBL:ESW83127.1};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
UPI0003CE4E1C related cluster n=1 Tax=unknown RepID=UPI0003CE4E1C
class I and II aminotransferase
SCN18_10_11_15_R4_B_scaffold_2181_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4596..4994
DNA (399bp) protein (133aa)
Acylphosphatase {ECO:0000256|RuleBase:RU000553}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
acylphosphatase (EC:3.6.1.7)
acylphosphatase n=1 Tax=Rhizobium phaseoli RepID=UPI00036E579C
SCN18_10_11_15_R4_B_scaffold_2181_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4901..5821)
DNA (921bp) protein (307aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035C36BB
N-acetyltransferase
Putative N-acetyltransferase {ECO:0000313|EMBL:ACP21727.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCN18_10_11_15_R4_B_scaffold_2181_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5918..6361)
DNA (444bp) protein (148aa)
UPI0003CE7A76 related cluster n=1 Tax=unknown RepID=UPI0003CE7A76
MarR family transcriptional regulator {ECO:0000313|EMBL:KGM31610.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
transcriptional regulator
SCN18_10_11_15_R4_B_scaffold_2181_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6479..6775)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003085ADB
Uncharacterized protein {ECO:0000313|EMBL:ESW88842.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Protein of unknown function (DUF3175)
SCN18_10_11_15_R4_B_scaffold_2181_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6905..7549
DNA (645bp) protein (215aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0L6_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:EHK53483.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
TetR family transcriptional regulator
SCN18_10_11_15_R4_B_scaffold_2181_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7542..8705
DNA (1164bp) protein (388aa)
Isovaleryl-CoA dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MI76_9RHIZ
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:EKF20420.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
isovaleryl-CoA dehydrogenase
SCN18_10_11_15_R4_B_scaffold_2181_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8784..9161
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DC28_9RHIZ
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:EDQ32346.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
SCN18_10_11_15_R4_B_scaffold_2181_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9158..9538
DNA (381bp) protein (127aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DC27_9RHIZ
twitching motility protein PilT
SCN18_10_11_15_R4_B_scaffold_2181_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9547..10632
DNA (1086bp) protein (362aa)
UPI0003CF2594 related cluster n=1 Tax=unknown RepID=UPI0003CF2594
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:ESY15493.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
acetyl/propionyl CoA carboxylase subunit beta
Displaying 13 items

View Taxonomy