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2019_SCN_bioreactor_t1_biofilm_scaffold_201620

Search features with annotation key words

Displaying items 1-30 of 284 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_1
unknown

Not on your lists

3..143
DNA (141bp) protein (47aa)

This feature has no annotations

2019_SCN_bioreactor_t1_biofilm_scaffold_201620_2
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

308..772
DNA (465bp) protein (155aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVV6_OPITP
YbaK/prolyl-tRNA synthetase associated domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

790..1719
DNA (930bp) protein (310aa)
Adenylate kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILN6_KORVE
adenylate kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_4
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

1830..3266
DNA (1437bp) protein (479aa)
Major facilitator superfamily MFS_1 id=2050812 bin=GWA2_Elusimicrobia_69_24 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Major facilitator superfamily MFS_1
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_5
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3379..4287
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00037D4BFA
glycosyl transferase
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABI57694.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_6
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(4385..5815)
DNA (1431bp) protein (477aa)
Carbohydrate kinase FGGY n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR98_OPITP
carbohydrate kinase FGGY
Carbohydrate kinase FGGY {ECO:0000313|EMBL:ACB74585.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_7
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

5942..6709
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS06_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74682.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_8
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

6711..8096
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS05_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74681.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_9
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

8143..10506
DNA (2364bp) protein (788aa)
Oligopeptide transporter, OPT family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A0C6_OPITP
Oligopeptide transporter, OPT family {ECO:0000313|EMBL:ACB77880.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
OPT family oligopeptide transporter
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_10
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

10511..11125
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS04_OPITP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11148..11498)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBA7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62792.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_12
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(11582..13081)
DNA (1500bp) protein (500aa)
Signal transduction histidine kinase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATC7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83222.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_13
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(13194..13931)
DNA (738bp) protein (246aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ISL3_9BACT
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHF90933.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_14
unknown

Not on your lists

14069..14974
DNA (906bp) protein (302aa)

This feature has no annotations

2019_SCN_bioreactor_t1_biofilm_scaffold_201620_15
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(15030..15833)
DNA (804bp) protein (268aa)
Ureidoglycolate lyase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ILZ6_9BACT
5-carboxymethyl-2-hydroxymuconate isomerase
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:AHF92761.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_16
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(15888..16748)
DNA (861bp) protein (287aa)
Transcriptional regulator, AraC family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXB4_OPITP
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACB76166.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

16867..17925
DNA (1059bp) protein (353aa)
Uroporphyrinogen decarboxylase (URO-D) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXB6_OPITP
uroporphyrinogen decarboxylase
Uroporphyrinogen decarboxylase (URO-D) {ECO:0000313|EMBL:ACB76168.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_18
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

17940..18581
DNA (642bp) protein (214aa)
Cobalamin B12-binding domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024B8_SOLUE
cobalamin B12-binding domain-containing protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_19
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

18596..20167
DNA (1572bp) protein (524aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Methylenetetrahydrofolate reductase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRF7_OPITP
methylenetetrahydrofolate reductase
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_20
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20164..21090
DNA (927bp) protein (309aa)
Pterin binding enzyme, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JES3_9BACT
Pterin binding enzyme, putative {ECO:0000313|EMBL:EDY85243.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
dihydropteroate synthase DHPS
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_21
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

21093..22373
DNA (1281bp) protein (427aa)
Amidohydrolase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPB6_OPITP
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ACB77605.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_22
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

22382..24019
DNA (1638bp) protein (546aa)
Ferredoxin n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRG3_OPITP
ferredoxin
Tax=RBG_16_Caldithrix_48_16_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

24016..24729
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024B5_SOLUE
Vitamin B12 dependent methionine synthase activation region
Vitamin B12 dependent methionine synthase activation region {ECO:0000313|EMBL:AHG92968.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_24
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

24726..25187
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRG2_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77612.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25219..25551
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRG1_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92966.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_26
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(25604..26449)
DNA (846bp) protein (282aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Glycine dehydrogenase (decarboxylating) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY13_OPITP
glycine dehydrogenase
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_27
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(26431..28368)
DNA (1938bp) protein (646aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Glycine dehydrogenase (decarboxylating) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY13_OPITP
glycine dehydrogenase
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_28
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

28480..29148
DNA (669bp) protein (223aa)
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Endonuclease III n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY14_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_29
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(29497..30639)
DNA (1143bp) protein (381aa)
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A094_OPITP
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase {ECO:0000313|EMBL:ACB77430.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_201620_30
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

30880..31905
DNA (1026bp) protein (342aa)
Putative oxidoreductase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7F8_CALAS
putative oxidoreductase
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
Displaying items 1-30 of 284 in total

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