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2019_SCN_bioreactor_t2_biofilm_scaffold_81283

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Displaying items 1-30 of 241 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_1
unknown

Not on your lists

299..994
DNA (696bp) protein (232aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_81283_2
unknown

Not on your lists

1588..3894
DNA (2307bp) protein (769aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_81283_3
unknown

Not on your lists

comp(3859..4110)
DNA (252bp) protein (84aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_81283_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4162..4899
DNA (738bp) protein (246aa)
Methyltransferase-like protein KIAA1627 homolog {ECO:0000313|EMBL:CCE96168.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCE96168.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Methyltransferase-like protein KIAA1627 homolog n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7D8_RHIFH
dmnA; Methyltransferase-like protein KIAA1627
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_5
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4980..5723)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B56BCE
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5720..7027)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037224BA
Flavin containing amine oxidoreductase family protein {ECO:0000313|EMBL:EGF96495.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
putative amine oxidase
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7053..7754)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B72695
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG77311.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_8
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7744..8967)
DNA (1224bp) protein (408aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y1W0_9PROT
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:EGY00495.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_9
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9174..9860
DNA (687bp) protein (229aa)
RNA polymerase sigma factor n=2 Tax=Rhodospirillum rubrum RepID=G2TB06_RHORU
RNA polymerase sigma factor RpoE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9857..10525
DNA (669bp) protein (223aa)
Anti-sigma-E factor ChrR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EH08_9RHIZ
Anti-sigma-E factor ChrR {ECO:0000313|EMBL:EYR77964.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Anti-ECF sigma factor
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10533..11399
DNA (867bp) protein (289aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V888_9BRAD
Carboxylesterase NlhH {ECO:0000313|EMBL:CEG09089.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
esterase/lipase/thioesterase family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11396..12235
DNA (840bp) protein (280aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV69_BREDI
Putative uncharacterized protein {ECO:0000313|EMBL:EGF96498.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_13
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12232..13260
DNA (1029bp) protein (343aa)
Methyltransferase type 11 n=2 Tax=Acidiphilium RepID=A5G2B6_ACICJ
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:EGO96273.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_14
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13262..13789
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EU26_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ39670.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_15
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14116..15354)
DNA (1239bp) protein (413aa)
nucleoside:proton symporter n=1 Tax=Methyloferula stellata RepID=UPI00037D3FC0
Nucleoside permease {ECO:0000313|EMBL:GAN76742.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Na+ dependent nucleoside transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15461..16552)
DNA (1092bp) protein (364aa)
Putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein; Glycolate oxidase id=3831002 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_17
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16621..17487
DNA (867bp) protein (289aa)
Gluconolactonase {ECO:0000313|EMBL:CDY73621.1}; EC=3.1.1.17 {ECO:0000313|EMBL:CDY73621.1};; Smp-30/Cgr1 family protein {ECO:0000313|EMBL:KDR40954.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
Gluconolactonase n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IRR2_9BURK
SMP-30/Gluconolaconase/LRE-like region family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_18
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17545..18429
DNA (885bp) protein (295aa)
N-formylglutamate amidohydrolase n=1 Tax=Acidiphilium sp. PM RepID=F7S532_9PROT
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EGO95745.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
N-formylglutamate amidohydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18678..19640
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000364A753
Lytic transglycosylase {ECO:0000313|EMBL:GAN76052.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_20
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19642..20763)
DNA (1122bp) protein (374aa)
carnitine dehydratase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000381DA50
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ACA19555.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_21
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20766..21935)
DNA (1170bp) protein (390aa)
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EFH11708.1}; EC=1.3.8.1 {ECO:0000313|EMBL:EFH11708.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Acyl-CoA dehydrogenase, C-terminal domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLX2_9PROT
acyl-CoA dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_22
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22128..22646
DNA (519bp) protein (173aa)
Putative sulfopyruvate decarboxylase alpha subunit {ECO:0000313|EMBL:CCD87934.1}; EC=4.1.1.79 {ECO:0000313|EMBL:CCD87934.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
sulfopyruvate decarboxylase subunit alpha (EC:4.1.1.79)
Putative sulfopyruvate decarboxylase alpha subunit n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S157_9BRAD
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_23
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22643..23260
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003734C79
Thiamine pyrophosphate binding domain-containing protein {ECO:0000313|EMBL:EKE75543.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
thiamine pyrophosphate domain-containing TPP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_24
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23635..24732
DNA (1098bp) protein (366aa)
Multidrug resistance protein mdtA n=1 Tax=Azospirillum amazonense Y2 RepID=G1XYS5_9PROT
Multidrug resistance protein mdtA {ECO:0000313|EMBL:EGY01575.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
RND family efflux transporter MFP subunit
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_25
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24779..27904
DNA (3126bp) protein (1042aa)
Acriflavin resistance protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFQ1_XANP2
Acriflavin resistance protein {ECO:0000313|EMBL:ABS66844.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
acriflavin resistance protein
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_26
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27914..28834
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZK13_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB82927.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_27
unknown

Not on your lists

comp(28854..29090)
DNA (237bp) protein (79aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_81283_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29234..30493
DNA (1260bp) protein (420aa)
Paraquat-inducible protein A n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVR5_GRABC
Paraquat-inducible protein A {ECO:0000313|EMBL:GAN76483.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Paraquat-inducible protein A
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_29
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30490..32223
DNA (1734bp) protein (578aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00037022BD
Uncharacterized protein {ECO:0000313|EMBL:KGM35049.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
pqiB; paraquat-inducible protein B
2019_SCN_bioreactor_t2_biofilm_scaffold_81283_30
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32220..32786
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVR3_GRABC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI61089.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Displaying items 1-30 of 241 in total

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