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2019_SCN_bioreactor_t2_biofilm_scaffold_41550

Search features with annotation key words

Displaying items 1-30 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_1
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..430
DNA (429bp) protein (143aa)
Methyl-accepting chemotaxis protein n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FF12_9XANT
methyl-accepting chemotaxis protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_2
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(440..2455)
DNA (2016bp) protein (672aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B67ED9
Uncharacterized protein {ECO:0000313|EMBL:KGM51913.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
serine/threonine protein kinase
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_3
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2519..3001)
DNA (483bp) protein (161aa)
Translation elongation factor P n=3 Tax=Xanthomonas RepID=H1XLU8_9XANT
tetrameric acyl-CoA thioesterase
Tetrameric acyl-CoA thioesterase {ECO:0000313|EMBL:AJC45394.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_4
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3064..3936)
DNA (873bp) protein (291aa)
thioredoxin n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B317CA
Uncharacterized protein {ECO:0000313|EMBL:KFN41418.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
thioredoxin
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_5
unknown

Not on your lists

4072..4722
DNA (651bp) protein (217aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_41550_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4719..5162
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC85940.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5159..5377
DNA (219bp) protein (73aa)
Transcriptional regulator, XRE family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV75_PSEUU
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ADV28074.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_8
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5374..5982
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV74_PSEUU
Uncharacterized protein {ECO:0000313|EMBL:AKC85938.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5948..6199)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1AX43_9ZZZZ
PQ-loop domain containing protein {ECO:0000313|EMBL:KGQ20722.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6196..7500)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B54FC
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHX15051.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7586..10372
DNA (2787bp) protein (929aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
leuS; leucine--tRNA ligase (EC:6.1.1.4)
leucyl-tRNA synthetase n=1 Tax=Dyella japonica RepID=UPI0002FBE437
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_12
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10469..10981
DNA (513bp) protein (171aa)
Rare lipoprotein b family n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQ21_PSEUP
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186, ECO:0000256|SAAS:SAAS00074334}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rare lipoprotein b family
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_13
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10998..12035
DNA (1038bp) protein (346aa)
DNA polymerase III subunit delta n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQ20_PSEUP
holA; DNA polymerase III subunit delta
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_14
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12041..12733
DNA (693bp) protein (231aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Xanthomonas perforans 91-118 RepID=F0BQS8_9XANT
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_15
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12730..13140
DNA (411bp) protein (137aa)
iojap family protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B5C0F6
iojap family protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_16
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13232..13702
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Ribosomal RNA large subunit methyltransferase H id=2861368 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
50S rRNA methyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_17
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13729..14853)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B7345F
Uncharacterized protein {ECO:0000313|EMBL:KGQ18590.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
colicin uptake-like protein
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_18
unknown

Not on your lists

comp(15013..15276)
DNA (264bp) protein (88aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_41550_19
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15310..15975)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U8B9_XANAP
HNH endonuclease {ECO:0000313|EMBL:KGM50969.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16103..17896)
DNA (1794bp) protein (598aa)
Acyl-CoA dehydrogenase n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3EYE2_STEMA
Stenotrophomonas maltophilia strain ZBG7B contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87748.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
acyl-CoA dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_21
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17996..18514)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UW26_XANC8
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_22
unknown

Not on your lists

comp(18526..18714)
DNA (189bp) protein (63aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_41550_23
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18854..20941)
DNA (2088bp) protein (696aa)
Metallopeptidase {ECO:0000313|EMBL:CEM57719.1}; EC=3.4.24.- {ECO:0000313|EMBL:CEM57719.1};; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
Metallopeptidase n=1 Tax=Xanthomonas axonopodis Xac29-1 RepID=M4TW44_9XANT
endothelin-converting enzyme
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_24
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21013..22404)
DNA (1392bp) protein (464aa)
peptidase, m16 (pitrilysin) family (EC:3.4.24.-)
Peptidase M16 inactive domain family n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DU7_STIAD
Uncharacterized protein {ECO:0000313|EMBL:KFN41425.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_25
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22401..23786)
DNA (1386bp) protein (462aa)
M16 family peptidase (EC:3.4.24.-)
peptidase M16 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B64F6A
Uncharacterized protein {ECO:0000313|EMBL:KFN41424.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23904..25277
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003679214
Beta-lactamase {ECO:0000313|EMBL:AKC87706.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
RNA-metabolising metallo-beta-lactamase
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_27
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25277..26014
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI000370E7BF
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_28
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26019..26366)
DNA (348bp) protein (116aa)
Putative membrane protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TGK1_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL77532.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
DoxX family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_29
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26685..28019
DNA (1335bp) protein (445aa)
RNA helicase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5D8BB
ATP-dependent RNA helicase RhlE {ECO:0000313|EMBL:KGQ20494.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
srmB; Superfamily II DNA and RNA helicase
2019_SCN_bioreactor_t2_biofilm_scaffold_41550_30
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28371..30008
DNA (1638bp) protein (546aa)
membrane protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262A9F9
Membrane protein {ECO:0000313|EMBL:KGM57561.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
yjdB; hypothetical protein
Displaying items 1-30 of 170 in total

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