ggKbase home page

2019_SCN_bioreactor_t2_biofilm_scaffold_58992

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_1
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

239..685
DNA (447bp) protein (149aa)
ACR family protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000366D38E
Putative exported protein {ECO:0000313|EMBL:EKU26323.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
ACR family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_2
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(707..898)
DNA (192bp) protein (64aa)
Rubredoxin n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4S7_FRAAD
rubredoxin
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_3
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

986..2275
DNA (1290bp) protein (430aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVY8_PSEUU
glutamate-1-semialdehyde-2,1-aminomutase
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2277..3158
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E8027D
Potassium voltage-gated channel subfamily A member 2 {ECO:0000313|EMBL:CCP18235.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
Ion transport protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_5
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3166..4293
DNA (1128bp) protein (376aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UN18_PSEUP
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:AER55329.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_6
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4302..5534)
DNA (1233bp) protein (411aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
acetylornithine aminotransferase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI0003615734
acetylornithine aminotransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5536..5955)
DNA (420bp) protein (140aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT4_9GAMM
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EIL97625.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lactoylglutathione lyase-like lyase
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_8
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..6826)
DNA (822bp) protein (274aa)
short-chain dehydrogenase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000365E3BB
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV28487.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_9
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6886..8808
DNA (1923bp) protein (641aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037CDB82
Membrane protein {ECO:0000313|EMBL:EYR66793.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
phosphoesterase PA-phosphatase-like protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_10
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8830..10191)
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramate-L-alanine ligase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTC8_PSEUP
UDP-N-acetylmuramate--L-alanine ligase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10327..10905)
DNA (579bp) protein (193aa)
adenylate kinase n=1 Tax=Xanthomonas sacchari RepID=UPI0002630624
adenylate kinase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_12
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11012..12265
DNA (1254bp) protein (418aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Phosphofructokinase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K1X0_STEMA
phosphofructokinase
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_13
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12350..13156
DNA (807bp) protein (269aa)
Peptidoglycan-binding domain-containing protein n=1 Tax=Thauera sp. 63 RepID=N6Y1L3_9RHOO
Peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:ENO76302.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
peptidoglycan-binding domain-containing protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_14
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

13247..13471
DNA (225bp) protein (75aa)
UPF0235 protein OsccyDRAFT_1510 n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GR42_9CYAN
UPF0235 protein OsccyDRAFT_1510 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_15
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13612..15768
DNA (2157bp) protein (719aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTD3_PSEUP
hppA; membrane-bound proton-translocating pyrophosphatase
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_16
unknown

Not on your lists

15986..16213
DNA (228bp) protein (76aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_58992_17
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16220..17833
DNA (1614bp) protein (538aa)
cytochrome bd-type quinol oxidase, subunit 1 (EC:1.10.3.-)
Cytochrome bd-I oxidase subunit I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1T6_9GAMM
Cytochrome BD oxidase subunit I {ECO:0000313|EMBL:EYR70229.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_18
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17826..18959
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B44EF
Cytochrome BD oxidase subunit II {ECO:0000313|EMBL:EYR70230.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
cytochrome d ubiquinol oxidase subunit II
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_19
Brucella microti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18959..19084
DNA (126bp) protein (42aa)
Cyd operon protein YbgT n=2 Tax=Brucella RepID=D1D1G1_9RHIZ
ybgT; ybgT
Cyd operon protein YbgT {ECO:0000313|EMBL:ACU49639.1}; TaxID=568815 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella microti (strain CCM 4915).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_20
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19093..19353
DNA (261bp) protein (87aa)
Cyd operon protein YbgE n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CR00_SIDLE
Uncharacterized protein {ECO:0000313|EMBL:EYR70232.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Cyd operon protein YbgE
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_21
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19382..20512)
DNA (1131bp) protein (377aa)
UPI0003D3B4AF related cluster n=1 Tax=unknown RepID=UPI0003D3B4AF
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:BAP87212.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20509..21030)
DNA (522bp) protein (174aa)
TIGR01244 family protein n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7VNK8_STEMA
TIGR01244 family protein {ECO:0000313|EMBL:EJP77968.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
beta-lactamase hydrolase-family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_23
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21027..21386)
DNA (360bp) protein (120aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Alkylhydroperoxidase id=2556628 bin=GWF1_Xanthomonadales_69_6 species=Azospirillum sp. genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_24
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21401..21841)
DNA (441bp) protein (147aa)
Thioredoxin n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DXK5_9GAMM
Thioredoxin {ECO:0000313|EMBL:KGM51556.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
thioredoxin
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_25
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21914..22339)
DNA (426bp) protein (142aa)
Phosphate-starvation-inducible E id=2911693 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter thiooxydans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
phosphate-starvation-inducible E
Tax=GWF1_Xanthomonadales_69_6_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_26
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22373..22846)
DNA (474bp) protein (158aa)
Peroxiredoxin {ECO:0000313|EMBL:KGI78477.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
OsmC family protein id=2536084 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
OsmC family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_27
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22925..26164)
DNA (3240bp) protein (1080aa)
Acriflavin resistance protein n=1 Tax=uncultured bacterium A1Q1_fos_600 RepID=L7VQG5_9BACT
Multidrug transporter AcrB {ECO:0000313|EMBL:KGM55283.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
multidrug transporter AcrB
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_28
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26157..27248)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037A9032
Uncharacterized protein {ECO:0000313|EMBL:KGM55284.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_29
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27235..27441)
DNA (207bp) protein (69aa)
A33Mdanese-related sulfurtransferase id=2556635 bin=GWF1_Xanthomonadales_69_6 species=uncultured bacterium A1Q1_fos_600 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
Tax=GWF1_Xanthomonadales_69_6_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_58992_30
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27526..28815)
DNA (1290bp) protein (430aa)
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGM55286.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=2556638 bin=GWF1_Xanthomonadales_69_6 species=uncultured bacterium A1Q1_fos_600 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Displaying items 1-30 of 117 in total

View Taxonomy