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2019_SCN_bioreactor_t2_biofilm_scaffold_18909

Search features with annotation key words

Displaying items 1-30 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_1
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(202..1428)
DNA (1227bp) protein (409aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
Tyrosine--tRNA ligase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPS5_PSEUU
tyrosyl-tRNA synthetase
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_2
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1601..3061
DNA (1461bp) protein (487aa)
Peptidase M23 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URI0_PSEUP
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:AER54655.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3088..4218
DNA (1131bp) protein (377aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
anhydro-N-acetylmuramic acid kinase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000377D679
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4206..5513)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000370779F
Major Facilitator Superfamily transporter
Major Facilitator Superfamily transporter {ECO:0000313|EMBL:AGG90899.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_5
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5510..6379)
DNA (870bp) protein (290aa)
catabolite repression control protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B358F
DNA-(Apurinic or apyrimidinic site) lyase {ECO:0000313|EMBL:KHL59736.1}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. cannabis.;"
exodeoxyribonuclease III
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_6
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6393..7043
DNA (651bp) protein (217aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
orotate phosphoribosyltransferase n=1 Tax=Xanthomonas sacchari RepID=UPI000262AAE8
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_7
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7075..7749
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B4EABF
Uncharacterized protein {ECO:0000313|EMBL:KGM53974.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_8
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7921..10287)
DNA (2367bp) protein (789aa)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPR4_PSEUU
Phosphomannomutase {ECO:0000313|EMBL:EYR65521.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10300..10761)
DNA (462bp) protein (154aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000376E569
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_10
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10758..11414)
DNA (657bp) protein (219aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (Fragment) n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GL03_XANCT
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11411..11968)
DNA (558bp) protein (186aa)
coaBC; coA biosynthesis protein CoABC (EC:4.1.1.36 6.3.2.5)
Probable coenzyme a biosynthesis bifunctional protein coabc (Dna/pantothenate metabolism flavoprotein) n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UBD3_XANAP
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase {ECO:0000313|EMBL:KGQ20135.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_12
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12011..12739
DNA (729bp) protein (243aa)
DNA repair protein RadC n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPR1_PSEUU
NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ98084.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
DNA repair protein RadC
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_13
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12960..13352)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Xanthomonas arboricola RepID=UPI0002FBBF68
SSU ribosomal protein S9P
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1304892 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis Xac29-1.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13365..13793)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQ14_PSEUU
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_15
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13975..14631
DNA (657bp) protein (219aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010155}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B7585F
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14665..15225)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89525.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_17
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15342..15875
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI0002631D10
Uncharacterized protein {ECO:0000313|EMBL:KGM54593.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_18
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15942..16733)
DNA (792bp) protein (264aa)
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00039304}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00465};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00465};; EC=4.1.1.50 {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00093036};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Lysobacter enzymogenes RepID=Q7WZ08_LYSEN
S-adenosylmethionine decarboxylase
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_19
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16878..17558
DNA (681bp) protein (227aa)
transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000372004F
Cyclic AMP receptor protein {ECO:0000313|EMBL:KGQ20010.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_20
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17579..18049
DNA (471bp) protein (157aa)
GCN5 family acetyltransferase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5300D
Uncharacterized protein {ECO:0000313|EMBL:KFN48275.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
GCN5-related N-acetyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18062..18784)
DNA (723bp) protein (241aa)
Possible phosphoserine phosphatase n=1 Tax=Lysobacter enzymogenes RepID=Q7WZ04_LYSEN
Haloacid dehalogenase {ECO:0000313|EMBL:KGM55097.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
haloacid dehalogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18781..19569)
DNA (789bp) protein (263aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
indole-3-glycerol-phosphate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FBE821
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_23
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19603..20640)
DNA (1038bp) protein (346aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
anthranilate phosphoribosyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EFD3AA
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_24
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20657..21190)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RJ25_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ74210.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_25
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21193..21771)
DNA (579bp) protein (193aa)
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWC3_PSEUU
glutamine amidotransferase
Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:ADV28331.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_26
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21839..23194)
DNA (1356bp) protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
histidine kinase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5CEFF
sensor protein basS/pmrB
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_27
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23200..23874)
DNA (675bp) protein (225aa)
XRE family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B778CA
XRE family transcriptional regulator {ECO:0000313|EMBL:EYR69243.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
2019_SCN_bioreactor_t2_biofilm_scaffold_18909_28
unknown

Not on your lists

comp(24176..24421)
DNA (246bp) protein (82aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_18909_29
unknown

Not on your lists

comp(24531..24740)
DNA (210bp) protein (70aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_18909_30
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24876..26366)
DNA (1491bp) protein (497aa)
anthranilate synthase component I (EC:4.1.3.27)
anthranilate synthase subunit I n=1 Tax=Xanthomonas sacchari RepID=UPI000262AA95
Anthranilate synthase, aminase component {ECO:0000313|EMBL:KGQ20058.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Displaying items 1-30 of 170 in total

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