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2019_SCN_bioreactor_t2_biofilm_scaffold_191080

Search features with annotation key words

Displaying items 1-30 of 177 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

467..2440
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WGR1_DELAC
Type VI secretion protein {ECO:0000313|EMBL:KIL02556.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
virD2; relaxase type IV secretory pathway VirD2
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2478..2951)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZNC5_THASP
Cytochrome C {ECO:0000313|EMBL:KIL02555.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_3
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3000..4199)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XER8_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23830.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_4
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4196..5062)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WVL9_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23829.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_5
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5062..6471)
DNA (1410bp) protein (470aa)
Metallo-beta-lactamase n=1 Tax=Thauera terpenica 58Eu PF3_9RHOO">RepID=S9ZPF3_9RHOO
Metallo-beta-lactamase {ECO:0000313|EMBL:EPZ15402.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
beta-lactamase domain-containing protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_6
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6479..6688)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0AXV4_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ15403.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6709..8247)
DNA (1539bp) protein (513aa)
RND transporter n=1 Tax=Pseudomonas stutzeri RepID=UPI000313065A
NodT family RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:GAO23860.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
NodT family RND efflux system outer membrane lipoprotein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8244..9362)
DNA (1119bp) protein (373aa)
ABC-2 type transporter n=4 Tax=Proteobacteria RepID=F4G4S1_ALIDK
ABC transporter
ABC-2 type transporter {ECO:0000313|EMBL:AEB84116.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9367..10536)
DNA (1170bp) protein (390aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003475830
ybhS; putative ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:GAO23862.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_10
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10533..12305)
DNA (1773bp) protein (591aa)
ABC transporter n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WUK2_PSEDE
ABC transporter
ABC transporter {ECO:0000313|EMBL:AGI23823.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12307..13347)
DNA (1041bp) protein (347aa)
transporter n=1 Tax=Dyella ginsengisoli RepID=UPI00034A4D02
Secretion protein HlyD {ECO:0000313|EMBL:KIL02545.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
secretion protein HlyD family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13375..13794)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XBZ0_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37349.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13862..14470)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WC73_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37348.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
TetR family transcriptional regulator
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14683..15627
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WWV9_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37347.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
LysR-family transcriptional regulator TraR
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15624..15902
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WDH7_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37346.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16139..18145
DNA (2007bp) protein (669aa)
Type IV secretion system protein VirD4 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WGP8_DELAC
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:EPD37345.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
conjugal transfer coupling protein TraG
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18142..18606
DNA (465bp) protein (155aa)
CopG-like domain-containing protein DNA-binding protein n=16 Tax=Proteobacteria RepID=F4GG95_ALIDK
CopG family transcriptional regulator
CopG family transcripitonal regulator {ECO:0000313|EMBL:ETD47580.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_18
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18603..19661
DNA (1059bp) protein (353aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MBY7_PSEAI
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KGM52060.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
P-type conjugative transfer ATPase TrbB
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_19
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19658..20044
DNA (387bp) protein (129aa)
TrbC-like protein n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MBP5_PSEAI
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KDD60153.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
conjugal transfer protein TrbC
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_20
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20041..20313
DNA (273bp) protein (91aa)
Type IV secretion system protein VirB3 n=6 Tax=Proteobacteria RepID=S2WDH0_DELAC
putative conjugal transfer TrbD transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20326..22779
DNA (2454bp) protein (818aa)
Type IV secretion system protein VirB4 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WGP4_DELAC
Type IV secretion system protein VirB4 {ECO:0000313|EMBL:EPD37340.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
conjugal transfer protein TrbE
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_22
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22776..23501
DNA (726bp) protein (242aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Aeromonas hydrophila SSU RepID=K1J6U5_AERHY
trbJ; conjugal transfer protein TrbJ
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23514..23846
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WC63_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37338.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
lipoprotein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23843..25207
DNA (1365bp) protein (455aa)
P-type conjugative transfer protein TrbL n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WWV1_DELAC
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EPD37337.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
conjugal transfer protein Trbl
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_25
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25232..25774
DNA (543bp) protein (181aa)
Conjugal transfer protein TrbF n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RHU0_PSEAI
trbF; conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KIZ32674.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_26
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25767..26756
DNA (990bp) protein (330aa)
Conjugative transfer protein TrbG n=1 Tax=Thauera terpenica 58Eu RepID=S9ZJU3_9RHOO
P-type conjugative transfer protein TrbG
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:AGI23807.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_27
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26759..28033
DNA (1275bp) protein (425aa)
Type IV secretion system protein VirB10 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XBY0_DELAC
conjugative transfer protein TrbI
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_28
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28030..28272
DNA (243bp) protein (81aa)
Pantoate-beta-alanine ligase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XS67_DELAC
Pantoate-beta-alanine ligase {ECO:0000313|EMBL:EPD42329.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
conjugal transfer protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_29
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28604..35245)
DNA (6642bp) protein (2214aa)
DNA helicase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000365DACC
DNA helicase related protein {ECO:0000313|EMBL:BAP34684.1}; TaxID=80870 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae subsp. avenae.;"
DNA helicase-like protein
2019_SCN_bioreactor_t2_biofilm_scaffold_191080_30
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35624..36100
DNA (477bp) protein (159aa)
cytidine / deoxycytidylate deaminase (EC:3.5.4.5 3.5.4.12)
deoxycytidylate deaminase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4661B
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
Displaying items 1-30 of 177 in total

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