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2019_SCN_bioreactor_t2_biofilm_scaffold_207161

Search features with annotation key words

Displaying items 1-30 of 186 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..148
DNA (147bp) protein (49aa)
Elongation factor Tu-A n=3 Tax=Xanthomonas campestris pv. campestris RepID=EFTU1_XANCP
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
translation elongation factor 1A (EF-1A/EF-Tu)
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_2
unknown

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148..261
DNA (114bp) protein (38aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_207161_3
unknown

Not on your lists

353..634
DNA (282bp) protein (94aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_207161_4
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


604..915
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=4 Tax=Xanthomonas campestris RepID=RS10_XANC8
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; TaxID=509169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain B100).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_5
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


927..1583
DNA (657bp) protein (219aa)
50S ribosomal protein L3 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7US01_PSEUP
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rplC; 50S ribosomal protein L3
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_6
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists


1586..2188
DNA (603bp) protein (201aa)
50S ribosomal protein L4 n=2 Tax=Stenotrophomonas maltophilia RepID=G0JZ44_STEMA
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328, ECO:0000313|EMBL:KIJ72361.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
50S ribosomal protein L4
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_7
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2185..2481
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F98405
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L25/L23
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_8
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2493..3320
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=2 Tax=Xanthomonas RepID=UPI000262A839
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L2
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_9
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3327..3593
DNA (267bp) protein (89aa)
30S ribosomal protein S19 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000318BC41
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
30S ribosomal protein S19
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_10
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists


3604..3939
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=2 Tax=Pseudoxanthomonas RepID=E6WVG5_PSEUU
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
50S ribosomal protein L22
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3942..4700
DNA (759bp) protein (253aa)
30S ribosomal protein S3 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002D76394
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
30S ribosomal protein S3
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_12
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4704..5117
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=9 Tax=Stenotrophomonas RepID=RL16_STRMK
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rplP; 50S ribosomal protein L16
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_13
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5117..5308
DNA (192bp) protein (64aa)
50S ribosomal protein L29 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030BEE8E
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L29
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_14
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5321..5584
DNA (264bp) protein (88aa)
30S ribosomal protein S17 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVG1_PSEUU
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
30S ribosomal protein S17
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_15
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5600..5968
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVG0_PSEUU
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
50S ribosomal protein L14
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5986..6300
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=2 Tax=Rhodanobacter RepID=I4VM82_9GAMM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
50S ribosomal protein L24
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_17
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6302..6844
DNA (543bp) protein (181aa)
50S ribosomal protein L5 n=1 Tax=Xanthomonas axonopodis RepID=UPI000313E941
LSU ribosomal protein L5P
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=487899 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. viticola.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_18
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6854..7159
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URY8_PSEUP
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rpsN; 30S ribosomal protein S14
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_19
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7352..7747
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URY7_PSEUP
rpsH; 30S ribosomal protein S8
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_20
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7761..8288
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DA52FE
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
50S ribosomal protein L6
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8372..8725
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F33629
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
LSU ribosomal protein L18P
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_22
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8878..9417
DNA (540bp) protein (180aa)
30S ribosomal protein S5 n=24 Tax=Xanthomonas RepID=RS5_XANAC
rpsE; probable 30S ribosomal protein S5
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_23
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9410..9598
DNA (189bp) protein (63aa)
50S ribosomal protein L30 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002EC3ED0
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
50S ribosomal protein L30
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_24
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9603..10040
DNA (438bp) protein (146aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
50S ribosomal protein L15 id=2431999 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rplO; 50S ribosomal protein L15
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_25
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10048..11397
DNA (1350bp) protein (450aa)
preprotein translocase subunit SecY n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000306E4B9
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
preprotein translocase subunit SecY
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_26
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11738..12094
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URY0_PSEUP
rpsM; 30S ribosomal protein S13
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_27
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12107..12502
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVE8_PSEUU
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
30S ribosomal protein S11
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_28
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12522..13151
DNA (630bp) protein (210aa)
30S ribosomal protein S4 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URX8_PSEUP
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpsD; 30S ribosomal protein S4
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_29
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13204..14202
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:KIJ72376.1}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:KIJ72376.1};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=12 Tax=Stenotrophomonas RepID=RPOA_STRMK
2019_SCN_bioreactor_t2_biofilm_scaffold_207161_30
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14419..14790
DNA (372bp) protein (124aa)
50S ribosomal protein L17 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVE5_PSEUU
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L17
Displaying items 1-30 of 186 in total

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