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SCNpilot_BF_INOC_scaffold_3001_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3001_curated_1
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..387
DNA (387bp) protein (129aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:678 RepID=R5L511_9CLOT
RluA family pseudouridine synthase
SCNpilot_BF_INOC_scaffold_3001_curated_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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444..1178
DNA (735bp) protein (245aa)
Arginine-binding extracellular protein ArtP n=1 Tax=Clostridium sp. D5 RepID=F0YTN9_9CLOT
Arginine-binding extracellular protein ArtP {ECO:0000313|EMBL:EGB94259.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
family 3 extracellular solute-binding protein
SCNpilot_BF_INOC_scaffold_3001_curated_3
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1246..1941
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6W9L0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07768.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
polar amino acid ABC transporter inner membrane subunit
SCNpilot_BF_INOC_scaffold_3001_curated_4
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1928..2653
DNA (726bp) protein (242aa)
Polar amino acid transport system ATP-binding protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N0J4_9FIRM rbh
Polar amino acid transport system ATP-binding protein {ECO:0000313|EMBL:EOS76814.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
polar amino acid ABC transporter ATPase rbh
SCNpilot_BF_INOC_scaffold_3001_curated_5

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comp(2689..3243)
DNA (555bp) protein (185aa)
PF14277 domain protein n=2 Tax=root RepID=R5N313_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKC44768.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3001_curated_trna_1
unknown

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3352..3435
DNA (84bp)
transferRNA Leu
SCNpilot_BF_INOC_scaffold_3001_curated_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3664..4782
DNA (1119bp) protein (373aa)
Isoaspartyl dipeptidase {ECO:0000256|PIRNR:PIRNR001238}; EC=3.4.19.- {ECO:0000256|PIRNR:PIRNR001238};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Isoaspartyl dipeptidase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LSY2_CLOCD rbh
isoaspartyl dipeptidase IadA rbh
SCNpilot_BF_INOC_scaffold_3001_curated_7
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4796..5611
DNA (816bp) protein (272aa)
Cyanophycinase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LSY0_CLOCD rbh
cyanophycinase rbh
Cyanophycinase {ECO:0000313|EMBL:CDZ24538.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_3001_curated_8
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5612..8167
DNA (2556bp) protein (852aa)
Cyanophycin synthetase n=1 Tax=Clostridium thermocellum BC1 RepID=U4MQV5_CLOTM rbh
cyanophycin synthetase rbh
Cyanophycin synthetase {ECO:0000313|EMBL:CDZ24537.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_3001_curated_9
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8322..9380
DNA (1059bp) protein (353aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
aspartate carbamoyltransferase (EC:2.1.3.2) rbh
Aspartate carbamoyltransferase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MGJ0_9FIRM rbh
SCNpilot_BF_INOC_scaffold_3001_curated_10
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

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9402..9710
DNA (309bp) protein (103aa)
trxC; thioredoxin (EC:1.8.1.8)
thioredoxin n=1 Tax=Corynebacterium ciconiae RepID=UPI00036F9AD7
Tax=CG_Delta_01
SCNpilot_BF_INOC_scaffold_3001_curated_11
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10150..11124
DNA (975bp) protein (325aa)
Tyrosine recombinase XerC n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NZ96_9FIRM rbh
Tyrosine recombinase XerC {ECO:0000313|EMBL:CDC03002.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Site-specific recombinase XerD rbh
SCNpilot_BF_INOC_scaffold_3001_curated_12
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11157..12158)
DNA (1002bp) protein (334aa)
Dockerin type I repeat protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VEE9_9CLOT
Dockerin type I repeat protein {ECO:0000313|EMBL:EDO58152.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
Beta-N-acetylglucosaminidase
SCNpilot_BF_INOC_scaffold_3001_curated_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13849..14697
DNA (849bp) protein (283aa)
Putative transcriptional Regulator, AraC family n=1 Tax=Clostridium sp. D5 RepID=F0YW66_9CLOT
Putative transcriptional Regulator, AraC family {ECO:0000313|EMBL:EGB93904.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
AraC family transcriptional regulator
SCNpilot_BF_INOC_scaffold_3001_curated_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14759..15727)
DNA (969bp) protein (323aa)
Putative membrane protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0MZR4_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EJF39939.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative membrane protein
SCNpilot_BF_INOC_scaffold_3001_curated_15
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15748..16011)
DNA (264bp) protein (88aa)
Tyrosine recombinase XerC n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TT44_9FIRM
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
xerD; tyrosine recombinase XerD
SCNpilot_BF_INOC_scaffold_3001_curated_16
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16607..17239)
DNA (633bp) protein (211aa)
Putative stage II sporulation protein M n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGU2_9CLOT
Putative stage II sporulation protein M {ECO:0000313|EMBL:EEG29316.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3001_curated_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17305..18117)
DNA (813bp) protein (271aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N5X1_9CLOT
SCNpilot_BF_INOC_scaffold_3001_curated_18
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18388..19140)
DNA (753bp) protein (251aa)
conserved hypothetical protein (EC:2.1.1.-) rbh
SCIFF radical SAM maturase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7I7_9FIRM rbh
SCIFF radical SAM maturase {ECO:0000313|EMBL:CDB42454.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Displaying 19 items

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