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SCNpilot_BF_INOC_scaffold_1942_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1942_curated_1
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..343
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6P8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38586.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1942_curated_2
Fusobacterium varium, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

407..1126
DNA (720bp) protein (240aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=469618 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium varium ATCC 27725.;"
adenosylhomocysteine nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X2L4_9CLOT
SCNpilot_BF_INOC_scaffold_1942_curated_3
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1910..2962
DNA (1053bp) protein (351aa)
Polysaccharide biosynthesis protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWY4_9CLOT
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDC04225.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
putative transporter
SCNpilot_BF_INOC_scaffold_1942_curated_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3005..3805
DNA (801bp) protein (267aa)
MazG family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWY5_9CLOT rbh
MazG family protein {ECO:0000313|EMBL:EDO60282.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
yabN; putative protein YabN rbh
SCNpilot_BF_INOC_scaffold_1942_curated_5
Selenomonas sp. CM52, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3859..4134
DNA (276bp) protein (92aa)
Putative integration host factor, beta subunit n=1 Tax=Selenomonas sp. CM52 RepID=J6I762_9FIRM
Putative integration host factor, beta subunit {ECO:0000313|EMBL:EJU28873.1}; TaxID=936381 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. CM52.;"
histone family protein DNA-binding protein
SCNpilot_BF_INOC_scaffold_1942_curated_6
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4197..4439
DNA (243bp) protein (81aa)
S4 domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RQU9_9CLOT
S4 domain protein {ECO:0000313|EMBL:CDC36832.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
SCNpilot_BF_INOC_scaffold_1942_curated_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4501..4782
DNA (282bp) protein (94aa)
Sporulation protein YabP n=1 Tax=Clostridium sp. CAG:413 RepID=R6PH25_9CLOT
Sporulation protein YabP {ECO:0000313|EMBL:CDC09032.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1942_curated_8
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4803..5315
DNA (513bp) protein (171aa)
Putative spore cortex biosynthesis protein YabQ n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PAJ0_9FIRM
Putative spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:EDS11170.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
putative membrane protein
SCNpilot_BF_INOC_scaffold_1942_curated_9
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5269..5580
DNA (312bp) protein (104aa)
Septum formation initiator n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PAJ1_9FIRM
Septum formation initiator {ECO:0000313|EMBL:EDS11171.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
SCNpilot_BF_INOC_scaffold_1942_curated_10
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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5622..6062
DNA (441bp) protein (147aa)
RNA binding S1 domain protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U807_ETHHY
RNA binding S1 domain-containing protein
RNA binding S1 domain protein {ECO:0000313|EMBL:ADU25939.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_1942_curated_11
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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6286..7458
DNA (1173bp) protein (391aa)
Amidohydrolase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U809_ETHHY rbh
amidohydrolase rbh
Amidohydrolase {ECO:0000313|EMBL:ADU25941.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_1942_curated_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7986..8273
DNA (288bp) protein (96aa)
fumarate hydratase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035D07A7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24811.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1942_curated_13
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8548..9057
DNA (510bp) protein (170aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CVD6_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CDA76799.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ribosomal subunit interface protein
SCNpilot_BF_INOC_scaffold_1942_curated_14
unknown

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comp(8947..9447)
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1942_curated_15
unknown

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comp(10280..10600)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1942_curated_16
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11298..11582
DNA (285bp) protein (95aa)
10 kDa chaperonin n=2 Tax=Clostridium RepID=A7VU24_9CLOT
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1942_curated_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11613..13253
DNA (1641bp) protein (547aa)
60 kDa chaperonin n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0P4_9FIRM rbh
groEL; Chaperonin GroEL rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
SCNpilot_BF_INOC_scaffold_1942_curated_18
Pontibacillus marinus, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13299..15476
DNA (2178bp) protein (726aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1385511 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Pontibacillus.;" source="Pontibacillus marinus BH030004 = DSM 16465.;"
pcrA2; ATP-dependent DNA helicase PcrA (EC:3.6.4.12) rbh
ATP-dependent DNA helicase PcrA n=1 Tax=Halobacillus sp. BAB-2008 RepID=L5NDC9_9BACI rbh
SCNpilot_BF_INOC_scaffold_1942_curated_19
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15675..16424
DNA (750bp) protein (250aa)
30S ribosomal protein S2 n=1 Tax=Clostridium sp. CAG:964 RepID=R6VEM4_9CLOT rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
30S ribosomal protein S2 rbh
SCNpilot_BF_INOC_scaffold_1942_curated_20
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16550..17458
DNA (909bp) protein (303aa)
Elongation factor Ts n=1 Tax=Clostridium leptum CAG:27 RepID=R6P1A9_9CLOT rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
tsf; Elongation factor Ts rbh
SCNpilot_BF_INOC_scaffold_1942_curated_21
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17560..18450)
DNA (891bp) protein (297aa)
Transcriptional regulator, AraC family n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8FQ99_PAEMK
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEI40319.1}; TaxID=1036673 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus (strain KNP414).;"
SCNpilot_BF_INOC_scaffold_1942_curated_22
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18580..21201
DNA (2622bp) protein (874aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYL7_PEDHD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU04499.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_BF_INOC_scaffold_1942_curated_23
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21239..22987)
DNA (1749bp) protein (583aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FST0_9CLOT rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EMS71583.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_BF_INOC_scaffold_1942_curated_24
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23209..24603
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R5X1_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDC40564.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein rbh
Displaying 24 items

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