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scnpilot_p_inoc_scaffold_4856

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4856_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..637)
DNA (636bp) protein (212aa)
Putative D-amino acid oxidase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SEU3_THIDA
D-amino acid oxidase
Putative D-amino acid oxidase {ECO:0000313|EMBL:AAZ97819.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.
scnpilot_p_inoc_scaffold_4856_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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745..1206
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367D6D2
type-4 fimbrial pilin related signal peptide protein; K08084 type IV fimbrial biogenesis protein FimT Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_p_inoc_scaffold_4856_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1242..1649
DNA (408bp) protein (136aa)
Type IV pilus modification protein PilV id=1333527 bin=GWE1_T_denit_62_9 species=gamma proteobacterium BDW918 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Type IV pilus modification protein PilV Tax=GWE1_Thiobacillus_62_9_curated
Type IV fimbrial biogenesis protein PilV
scnpilot_p_inoc_scaffold_4856_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1646..2332
DNA (687bp) protein (229aa)
Putative Tfp pilus assembly protein PilW id=1333526 bin=GWE1_T_denit_62_9 species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
putative Tfp pilus assembly protein PilW; K02672 type IV pilus assembly protein PilW Tax=GWE1_Thiobacillus_62_9_curated
Tfp pilus assembly protein PilW
scnpilot_p_inoc_scaffold_4856_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2338..2874
DNA (537bp) protein (179aa)
Type IV pilus minor pilin PilX id=1333525 bin=GWE1_T_denit_62_9 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tfp pilus assembly protein PilX; K02673 type IV pilus assembly protein PilX Tax=GWE1_Thiobacillus_62_9_curated
pilX; type IV pilus minor pilin PilX
scnpilot_p_inoc_scaffold_4856_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2904..6008
DNA (3105bp) protein (1035aa)
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; K02674 type IV pilus assembly protein PilY1 Tax=GWE1_Thiobacillus_62_9_curated
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein id=1333524 bin=GWE1_T_denit_62_9 species=Ralstonia pickettii genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein
scnpilot_p_inoc_scaffold_4856_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6005..6418
DNA (414bp) protein (138aa)
Fimbrial protein pilin id=1333523 bin=GWE1_T_denit_62_9 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
fimbrial protein pilin; K02655 type IV pilus assembly protein PilE Tax=GWE1_Thiobacillus_62_9_curated
fimbrial protein pilin
scnpilot_p_inoc_scaffold_4856_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6741..7304
DNA (564bp) protein (188aa)
Methylation id=1333522 bin=GWE1_T_denit_62_9 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
methylation; K08084 type IV fimbrial biogenesis protein FimT Tax=GWE1_Thiobacillus_62_9_curated
methylation
scnpilot_p_inoc_scaffold_4856_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7375..7746)
DNA (372bp) protein (124aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003776AEC
Displaying 9 items

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