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scnpilot_p_inoc_scaffold_2086

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Displaying 15 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2086_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1233
DNA (1233bp) protein (411aa)
conjugal transfer protein TraG n=1 Tax=Dyella ginsengisoli RepID=UPI00034CDC1E
Conjugal transfer protein TraG {ECO:0000313|EMBL:KIL04423.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas st
hypothetical protein
scnpilot_p_inoc_scaffold_2086_2
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1230..1979
DNA (750bp) protein (250aa)
Putative membrane protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MDN7_BORPB rbh
membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCJ47872.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapert
scnpilot_p_inoc_scaffold_2086_3
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2114..3472)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Mycobacterium canettii CIPT 140070008 RepID=L0Q4X1_9MYCO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EDM33296.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM
scnpilot_p_inoc_scaffold_2086_4
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3469..5304)
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EBD7_BRASB rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ33481.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
scnpilot_p_inoc_scaffold_2086_5
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5552..6313)
DNA (762bp) protein (254aa)
Lj965 prophage protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMK7_VEREI rbh
Lj965 prophage protein
Lj965 prophage protein {ECO:0000313|EMBL:ABM58864.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacte
scnpilot_p_inoc_scaffold_2086_6
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6310..6753)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMK6_VEREI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM58863.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobact
scnpilot_p_inoc_scaffold_2086_7
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6758..9775)
DNA (3018bp) protein (1006aa)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UQF6_9DELT rbh
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EPR34558.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulf
HsdR family type I site-specific deoxyribonuclease
scnpilot_p_inoc_scaffold_2086_8
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9772..10353)
DNA (582bp) protein (194aa)
Restriction modification system DNA specificity domain-containing protein n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UL17_9DELT rbh
Restriction endonuclease {ECO:0000313|EMBL:AJY68393.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurred
restriction modification system DNA specificity subunit
scnpilot_p_inoc_scaffold_2086_9
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10359..11036)
DNA (678bp) protein (226aa)
Restriction modification system DNA specificity domain protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BX92_BEUC1 rbh
restriction modification system DNA specificity domain-containing protein
Restriction modification system DNA specificity domain protein {ECO:0000313|EMBL:ACQ78767.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="B
scnpilot_p_inoc_scaffold_2086_10
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11033..12598)
DNA (1566bp) protein (522aa)
type I restriction endonuclease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035CE9AF
Restriction endonuclease subunit M {ECO:0000313|EMBL:AJY68394.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter
type I restriction-modification system, M subunit
scnpilot_p_inoc_scaffold_2086_11
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12922..13137)
DNA (216bp) protein (72aa)
Putative helicase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HZE3_PSEUO
DNA-binding protein {ECO:0000313|EMBL:ETM65997.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain
phage transcriptional regulator AlpA
scnpilot_p_inoc_scaffold_2086_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13300..13452)
DNA (153bp) protein (51aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
hypothetical protein n=1 Tax=Proteobacteria RepID=UPI0003115DC3
hypothetical protein
scnpilot_p_inoc_scaffold_2086_13
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13551..13922
DNA (372bp) protein (124aa)
Putative transmembrane protein n=3 Tax=Pseudomonas stutzeri RepID=I4CR07_PSEST
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:EPL61012.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomona
scnpilot_p_inoc_scaffold_2086_14
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13919..14158
DNA (240bp) protein (80aa)
Integrating conjugative element protein n=8 Tax=Pseudomonas aeruginosa RepID=N2CRJ9_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KIN90523.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2086_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14181..14549
DNA (369bp) protein (123aa)
Integrating conjugative element membrane protein n=5 Tax=Pseudomonas aeruginosa RepID=U8BTS2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CEI17405.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginos
conjugal transfer protein
Displaying 15 items

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