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scnpilot_p_inoc_scaffold_1212_13

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: 10373..12943

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TX3_RHOFD similarity UNIREF
DB: UNIREF100
  • Identity: 55.5
  • Coverage: 732.0
  • Bit_score: 761
  • Evalue 1.10e-216
  • rbh
sigma 28 similarity KEGG
DB: KEGG
  • Identity: 55.5
  • Coverage: 732.0
  • Bit_score: 761
  • Evalue 3.00e-217
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferri similarity UNIPROT
DB: UniProtKB
  • Identity: 55.5
  • Coverage: 732.0
  • Bit_score: 761
  • Evalue 1.50e-216

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Taxonomy

Rhodoferax ferrireducens → Rhodoferax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2571
GTGACAGGCGTCGAAAGCGCGGTGCGGATCCACATCAACCGGGGCGACGACATCAACGCCCGGGACGGGAAGGGCCAGACTCCCCTCATGCTCGCCGCGGCATACAACAACGCGGCCATTTGCGAACTCCTGCTTGTCGCCGGCGCCGATCCCGGTTTGCTGGATGATCTGGGGCGCACTGCCCTGGACATTGCACAGGCAGCGAGGGCTGTTGATGCAGCGTCGACCATCCAGGCGGCGTGCATGTCGCGGAAGGTGGCGCGAGATGAAGATGGCTCAGGCGATCCTGCGGCTTGCGTCGTCGAGGACCCTGAGACACCAGTCGCCGGCGATGCACCAGCCTTCCACCGCGTTGCGATTTCCACAGGGGAGCCTGACTGGGTTTCCAACCCCGCGCCGGAGGTGGCGCCTGCCACTCCCGATGCCGGGTGGGTGGTCGATGATCGCAGCGGATTCGATCTGACCGGATGGGAAGCCGAAGCGGACCCCGCTCCGCCCGAGGGAGATCCGGCAGTTGCCGCGGCAGCTGTTGAAGTTCAGTCAGCGATCACCGGGCACCAGCCCGTCGACACGTCGGCCGGCTGGGACGACTTCGAGACGTTCCTGCCCGACCGGGCCGCGGCGTTGCTACCTGCCGATGATCTCGAGGCACGCGAGCGCCTGCGCCTCGTTTTGCTCCGGGCCGTTCGCGAGGGAAGCGTTCCGCATTCGGCCCTCGAGGACCTGACGCACGGCGATGATGGCGAGCCCGACATGCAGGCCGGGGCACTGCTGCACATGGTCATCAACGACCTCGGTGCCGAGACCGACGAACGCTTCGAGTACTCGGCTCCACACGAGAGTTTCGAAGTGTTCGTGCCGCCGGACGGAAGGCCTGACGAGGAGGACAAGGTCGCCGAGGCCCTGGCCTTCCTGGGCGATCTGACCTGTGGTCACAACGAACCCCTGCGCATCTACCAACGGGAATTCCAGCGCGAAGCCCTGCTCTCCGCTGAAGTGGAGGTCGCCCTTGGCCAAGCCATGGAGCGTGGCATCCACGATGCCCTTGATGCGCTGGCAGCGTGGCCTTCCGGCATCGCTGCCGTGCTGGACGCAGCCCGGGAGGTGATGTCGGGCTCGAAGCCGCCGAGCTGGATGTCTTCGGGGGCGGCCATCGGACGGCAGAAGGCTGAAGACGAGCCCGGCGAAGAACTCGAGGCTGACATCGAGCCGGAGCTGCCGGAGGACGGCGAGGACACAGACGCCGAGGATGAGAGCGGTTTCCATGTTGCGCCCGAGGACGGTGATACCTCCGGCGAGCTTGCAGAGTTCTGCGCCAACGCGGAGCTGCTGTCCGGCCTTGCCGTCGCGGCAGGCCGGGATGCGCCGGGATGGGGCGCTTGCCGGGACAGCCTTGCATCGCTTGGCTTGACACCCGGCTTTCTCATGCAACTGGCCGACTCGGGACTCACCGGAGAAACAGAGCCGGCCCTGGCATTCAGGCGGGCAGTCAGGGCCTACCGGCAGGCGCGCGACAGGATGACCGTCGCCAACCTGAAGCTCGTCTTTTCCATCGCCAGAAAATATCTGTACAGCGGCCAGCCCCTGGATGATCTCCTCCAGGAAGGAAACATCGGCCTCATCATGGCCGTGGACCGGTACGACTGGCGCAAGGGATTCAGGTTTTCGACCTATGCCACGTGGTGGATACGCCAGCGGGTCGGACGCTACGTCGCCGACAAGGGGAGGATCATCCGTCTTCCGGTCCACCTCCATCAGAAGACCCGGCGCATCGCGCAGGTGGCGCACGCCTTCGAGCTCAGGCATGGTCGTCCGCCCACGCCTGAAGAGACTGCCTCGCTCGTCGATCTGCCTGCCCGCAAGGTCGCAGTCCTCTCCCGCATTGGCCTGGAGCCGCTGCCACTTCATGATCTGCACGACATTGACGACCTTGTCACCGCCGACGCCCGCGATCGATTCACGCTCCGTGACCCCATGGAGATCGTCGAGGACATCCAGTTGGGTCAATCGGTTGACCGCTTCCTGAGCACTCTCAAGCTCAAGGAGGCGGGTGTCCTGCGAATGCGCCATGGCATCGGCATTCAGGACTCGATGACGCTCGAGGAGATAGGTGTGCGGCTTGAAGTGACGCGCGAGCGCATCCGGCAAATCGAGGGCAGGGCCCTGCGGCGGCTCCGGCATCCCGCACGGCTCGACCGATTCCTGAACGAGCTCGGCCTTGCCCCGGCTCCCGGGCCTGAGCAAAGCGCCGAGGAGCCAGGCGATGCGGATGACGATGGCGAGGGCGTCGTGGTGAACGAAAGGACGAACGCCGCAGCGCCCGAGCCGAAGCCGCCAGCGCCTGCGGTTCCCCGCCCCGAGCGGCGGGCTGACCCTGCGCCGTCGGCACTCGACAAGCTTCTGGACCATGCGCGCAACGCCGGCATCGTCGTCGAGGACCACCTCGAGGGGTCCGAGCGCCGGCTTTGGGTCCACATCACGAAAACGCCCGACAAACGCTCCCGCTGGATTGTCCGGAAGCTGATCGAGCTCGGGTTCGAGTTATGGCCAGGGAAAGGCTACTGGCGATGA
PROTEIN sequence
Length: 857
VTGVESAVRIHINRGDDINARDGKGQTPLMLAAAYNNAAICELLLVAGADPGLLDDLGRTALDIAQAARAVDAASTIQAACMSRKVARDEDGSGDPAACVVEDPETPVAGDAPAFHRVAISTGEPDWVSNPAPEVAPATPDAGWVVDDRSGFDLTGWEAEADPAPPEGDPAVAAAAVEVQSAITGHQPVDTSAGWDDFETFLPDRAAALLPADDLEARERLRLVLLRAVREGSVPHSALEDLTHGDDGEPDMQAGALLHMVINDLGAETDERFEYSAPHESFEVFVPPDGRPDEEDKVAEALAFLGDLTCGHNEPLRIYQREFQREALLSAEVEVALGQAMERGIHDALDALAAWPSGIAAVLDAAREVMSGSKPPSWMSSGAAIGRQKAEDEPGEELEADIEPELPEDGEDTDAEDESGFHVAPEDGDTSGELAEFCANAELLSGLAVAAGRDAPGWGACRDSLASLGLTPGFLMQLADSGLTGETEPALAFRRAVRAYRQARDRMTVANLKLVFSIARKYLYSGQPLDDLLQEGNIGLIMAVDRYDWRKGFRFSTYATWWIRQRVGRYVADKGRIIRLPVHLHQKTRRIAQVAHAFELRHGRPPTPEETASLVDLPARKVAVLSRIGLEPLPLHDLHDIDDLVTADARDRFTLRDPMEIVEDIQLGQSVDRFLSTLKLKEAGVLRMRHGIGIQDSMTLEEIGVRLEVTRERIRQIEGRALRRLRHPARLDRFLNELGLAPAPGPEQSAEEPGDADDDGEGVVVNERTNAAAPEPKPPAPAVPRPERRADPAPSALDKLLDHARNAGIVVEDHLEGSERRLWVHITKTPDKRSRWIVRKLIELGFELWPGKGYWR*