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scnpilot_p_inoc_scaffold_8308_8

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: 3579..4694

Top 3 Functional Annotations

Value Algorithm Source
Plasmid encoded RepA protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I760_RHOVT similarity UNIREF
DB: UNIREF100
  • Identity: 50.4
  • Coverage: 363.0
  • Bit_score: 363
  • Evalue 2.80e-97
  • rbh
Plasmid partitioning protein RepA {ECO:0000313|EMBL:EYR79536.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12. similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 371.0
  • Bit_score: 744
  • Evalue 8.10e-212
plasmid encoded RepA protein similarity KEGG
DB: KEGG
  • Identity: 50.4
  • Coverage: 363.0
  • Bit_score: 363
  • Evalue 7.80e-98

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1116
ATGACCGAACAGACCAAGCCAGACCCTTCGCTTATCCGTGACGCCGACCTGAAACAGGAGCTAGTGCGCCACCAGCGGCGAAACTTGGCACCCAGAATGTACGAGCTTGAGGTGCAGCTCCTTATTGAGGAGCAGGCCAAGCGCGACGAGGCCAAGGCCGCACGTTCGGCCGAACTCGAAGCCATGCCGCGCGGAGCGCGCCGACGGGCGAAAAGCAAGGACGCCCTTGAAGTCGGCGGCCAGCGTGAAGACCTCCGGCATATTCACAGCGTTCTTGCCCTGTGCGGCCTACCCTACAGCCGCCAGCCCATCGAGGAGCGCGAATATCGCAGCAAACAGGGCAACATGCGCCTCATCGTCAATGCGGGCGAGCTGTTGTCGCCCGAAGGCGAGTTCGTCAAGCAGCCCTTGCCCTACGGCTCGCGGGCGCGCCTGCTGTTGCTCCACCTGTGCAGCGAAGCTATCCGCCAGCAATCCCCGACCATCAACATTGACGACAGCCTGACCGCCTTCATCAAAAAGATGGGCTTTGACGCCAACGGCGGCCCACGCGGCAACCTGACCGCCTTCAAGCAGCAGGTGAACGCGCTCGCCGCCTGCAAAATGACCATCGGCACCTTTGACGAGAAGGGCGGTCGGGCCAAGACGGTCAACACGGCCCCCTTTGCGTCGCTGGACGTATGGTTTCCGACCAATCCAGACCAGCAAATGCTTTGGCCCAGCACAATCACGTTCAGCCGCGAGTTCTACGACACGCTTGCCAAACACGCCTTGCCGGTCAACGTCCATGCCATTCGGGCATTCTCGGATTCCCCCCGCAAAATCGACATCTACTATTGGCTTAGCCACCGCAGCTACAGCCTCACCGAACCGATTGCGATTAGCTGGGAATCCCTCAAGGAGCAGTTCGGCGAAGGGCATTTCGTGACCTCGGGGAAGACAGGGGGCTACACCCGCGACCGCGATTTCCGTGCGAAGTTCAAGGAAGAGCTGAAGCATATCTGCGAGGTGTTTCCCAAGCTCCCCGTCAGCGTGACGGAAACCGGAATCCGGCTGAAACCAGCCGATTCGGACGTGCTGTCAATACCAGCCAAGCGTTCCACGAAAAAAGCGTGA
PROTEIN sequence
Length: 372
MTEQTKPDPSLIRDADLKQELVRHQRRNLAPRMYELEVQLLIEEQAKRDEAKAARSAELEAMPRGARRRAKSKDALEVGGQREDLRHIHSVLALCGLPYSRQPIEEREYRSKQGNMRLIVNAGELLSPEGEFVKQPLPYGSRARLLLLHLCSEAIRQQSPTINIDDSLTAFIKKMGFDANGGPRGNLTAFKQQVNALAACKMTIGTFDEKGGRAKTVNTAPFASLDVWFPTNPDQQMLWPSTITFSREFYDTLAKHALPVNVHAIRAFSDSPRKIDIYYWLSHRSYSLTEPIAISWESLKEQFGEGHFVTSGKTGGYTRDRDFRAKFKEELKHICEVFPKLPVSVTETGIRLKPADSDVLSIPAKRSTKKA*