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scnpilot_p_inoc_scaffold_318_189

Organism: SCNpilot_P_inoc_Thiobacillus_strain2_63_34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: comp(182307..182903)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12496718 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 199.0
  • Bit_score: 386
  • Evalue 1.30e-104
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 96.0
  • Coverage: 198.0
  • Bit_score: 375
  • Evalue 8.10e-102
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci similarity UNIPROT
DB: UniProtKB
  • Identity: 96.0
  • Coverage: 198.0
  • Bit_score: 375
  • Evalue 4.00e-101

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 597
ATGTCGGACCGCGAACTGGATCAGGTGCTGGTCGAACGCGCTCAGAAGGGCGACAAGCGCGCCTTCGAGCTGCTGGTGAGCAAGTATCACCGCAAGCTCGGCCGGCTGCTGTCGCGCATGGTGCGCGACGCGGCCGAAGTGGAAGACATCACGCAGGAAGCCTTCATCAAGGCCTACCGGGCATTGCCGGGTTTCCGTGGCGAGAGTGCGTTCTACACCTGGCTGTACCGGATCGCGGTCAATACGGCGAAGAACTATCTGGTCGCGCACAAGCGCCAGCCGGTTTCCTCCGACGTATTGGCCGAGGACGCGGAGAATTTCGAGGACGGCGACCTGCTGCGCGATATCGCGACGCCGGACGCGGAACTCCAGACCAAGCAGATCGCCAAAGCGGTGAACGAGGCCGTGGAAGCGTTGCCCGAGGAATTGAGAACGGCCATCACCTTGCGCGAAATCGAAGGCATGAGTTACGAGGAAATCGCGCAGATGATGACTTGCCCGATTGGTACCGTGCGTTCCCGGATTTTTCGTGCACGCGAGGCGATTGCGGAGAAAATACGCCCCATGCTGGGAACGAGTCAGGATAAAAGGTGGTAA
PROTEIN sequence
Length: 199
MSDRELDQVLVERAQKGDKRAFELLVSKYHRKLGRLLSRMVRDAAEVEDITQEAFIKAYRALPGFRGESAFYTWLYRIAVNTAKNYLVAHKRQPVSSDVLAEDAENFEDGDLLRDIATPDAELQTKQIAKAVNEAVEALPEELRTAITLREIEGMSYEEIAQMMTCPIGTVRSRIFRAREAIAEKIRPMLGTSQDKRW*