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SCNpilot_P_inoc_Thiobacillus_strain2_63_34

SCNpilot_P_inoc_Hydrogenophilales_65_36
In projects: SCNpilot_P_inoc

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 35.53 Longest contig: 433.22 Kbp Bin length: 3.01 Mbp GC content: 64.72 %
Contigs count: 64 Features count: 3030 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 2

Description

maybe curate

Displaying items 1-50 of 64 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_47
Order: Hydrogenophilales (81.46%)
426 433217 bp 65.54 38.30 93.34
scnpilot_p_inoc_scaffold_95
Order: Hydrogenophilales (78.3%)
318 327410 bp 64.86 32.28 93.91
scnpilot_p_inoc_scaffold_217
Order: Hydrogenophilales (94.98%)
299 310369 bp 65.32 39.40 94.52
scnpilot_p_inoc_scaffold_318
Order: Hydrogenophilales (73.54%)
223 212872 bp 64.94 34.75 91.87
scnpilot_p_inoc_scaffold_427
Order: Hydrogenophilales (75.52%)
192 187074 bp 64.55 33.14 92.31
scnpilot_p_inoc_scaffold_209
Order: Hydrogenophilales (82.91%)
158 150084 bp 62.47 32.32 93.09
scnpilot_p_inoc_scaffold_215
Order: Hydrogenophilales (72.6%)
146 146786 bp 64.19 38.42 92.56
scnpilot_p_inoc_scaffold_221
Order: Hydrogenophilales (80.14%)
146 144391 bp 65.63 39.42 93.10
scnpilot_p_inoc_scaffold_232
Order: Hydrogenophilales (66.2%)
142 147892 bp 65.31 34.10 93.66
scnpilot_p_inoc_scaffold_234
Order: Hydrogenophilales (80%)
140 138111 bp 65.28 33.76 91.98
scnpilot_p_inoc_scaffold_260
Order: Hydrogenophilales (66.67%)
126 128140 bp 66.25 37.66 95.51
scnpilot_p_inoc_scaffold_299
Order: Hydrogenophilales (85.45%)
110 115549 bp 65.27 38.33 94.26
scnpilot_p_inoc_scaffold_348
Order: Hydrogenophilales (73%)
100 99944 bp 66.12 36.43 91.28
scnpilot_p_inoc_scaffold_460
Order: Hydrogenophilales (90.91%)
66 76316 bp 66.70 36.59 89.96
scnpilot_p_inoc_scaffold_544
Order: Hydrogenophilales (81.25%)
64 64342 bp 65.13 32.09 91.60
scnpilot_p_inoc_scaffold_649
Order: Hydrogenophilales (73.68%)
57 53289 bp 61.41 28.37 94.36
scnpilot_p_inoc_scaffold_819
Order: Hydrogenophilales (94.55%)
55 40136 bp 62.12 36.32 92.91
scnpilot_p_inoc_scaffold_1380
Class: Betaproteobacteria (68.57%)
35 25607 bp 59.56 30.11 89.01
scnpilot_p_inoc_scaffold_983
Class: Betaproteobacteria (73.53%)
34 32640 bp 62.88 30.30 88.31
scnpilot_p_inoc_scaffold_1275
Order: Hydrogenophilales (80.77%)
26 23662 bp 63.21 33.09 93.09
scnpilot_p_inoc_scaffold_2050
Order: Hydrogenophilales (82.35%)
17 15073 bp 59.92 32.66 82.70
scnpilot_p_inoc_scaffold_2762
Order: Hydrogenophilales (52.94%)
17 11537 bp 60.45 34.35 87.29
scnpilot_p_inoc_scaffold_6369
Species: Pseudomonas aeruginosa (56.25%)
16 15588 bp 62.30 32.38 94.63
scnpilot_p_inoc_scaffold_1949
Order: Hydrogenophilales (84.62%)
13 15426 bp 61.79 34.51 93.21
scnpilot_p_inoc_scaffold_1826
Class: Betaproteobacteria (66.67%)
12 16382 bp 55.85 25.14 96.84
scnpilot_p_inoc_scaffold_11441
Species: Comamonas testosteroni (50%)
6 4727 bp 58.43 26.53 87.39
scnpilot_p_inoc_scaffold_25621
Order: Hydrogenophilales (60%)
5 2335 bp 59.10 31.73 81.46
scnpilot_p_inoc_scaffold_19780
Species: Burkholderia sp. M701 (60%)
5 2843 bp 58.11 28.81 93.49
scnpilot_p_inoc_scaffold_12015
Species: Pseudomonas aeruginosa (60%)
5 4119 bp 61.52 32.81 86.82
scnpilot_p_inoc_scaffold_24109
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 2449 bp 58.35 31.60 95.92
scnpilot_p_inoc_scaffold_8319
Genus: Bradyrhizobium (50%)
4 5686 bp 60.59 31.42 91.22
scnpilot_p_inoc_scaffold_29865
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2068 bp 67.60 29.16 100.10
scnpilot_p_inoc_scaffold_33114
Phylum: Proteobacteria (100%)
3 1905 bp 64.57 40.94 89.13
scnpilot_p_inoc_scaffold_15060
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3485 bp 56.59 28.75 83.33
scnpilot_p_inoc_scaffold_20721
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2744 bp 63.67 31.71 91.84
scnpilot_p_inoc_scaffold_35878
Order: Hydrogenophilales (66.67%)
3 2357 bp 64.02 31.37 95.08
scnpilot_p_inoc_scaffold_26786
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2585 bp 66.11 28.84 94.70
scnpilot_p_inoc_scaffold_18779
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 3812 bp 62.67 32.90 88.69
scnpilot_p_inoc_scaffold_27648
Species: Thiobacillus denitrificans (50%)
2 2200 bp 61.95 33.89 91.23
scnpilot_p_inoc_scaffold_62890
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1142 bp 64.97 34.54 85.90
scnpilot_p_inoc_scaffold_62123
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1471 bp 61.66 41.91 89.73
scnpilot_p_inoc_scaffold_52918
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1309 bp 68.30 33.35 99.47
scnpilot_p_inoc_scaffold_43720
Species: Thiobacillus denitrificans (100%)
2 1524 bp 67.45 29.82 95.47
scnpilot_p_inoc_scaffold_23007
Species: Sulfuricella sp. T08 (50%)
2 2537 bp 62.04 31.75 92.47
scnpilot_p_inoc_scaffold_47670
Species: Thiobacillus sp. SCN2 (50%)
2 1422 bp 58.79 27.85 84.81
scnpilot_p_inoc_scaffold_29472
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2423 bp 65.21 33.06 91.62
scnpilot_p_inoc_scaffold_33628
Species: Thiobacillus denitrificans (50%)
2 2207 bp 61.76 35.14 89.31
scnpilot_p_inoc_scaffold_73308
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1014 bp 54.34 38.76 100.30
scnpilot_p_inoc_scaffold_35584
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1798 bp 59.90 32.20 85.93
scnpilot_p_inoc_scaffold_42069
Species: Thiobacillus denitrificans (50%)
2 1570 bp 68.47 27.71 100.13
Displaying items 1-50 of 64 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.