ggKbase home page

scnpilot_p_inoc_scaffold_983

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_983_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..324
DNA (324bp) protein (108aa)
soxX; SoxX protein id=12498606 bin=THIO_MID species=Thiothrix flexilis genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL71949.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;"
scnpilot_p_inoc_scaffold_983_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

390..857
DNA (468bp) protein (156aa)
transmembrane protein id=12498607 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
transmembrane protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
transmembrane protein
scnpilot_p_inoc_scaffold_983_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

907..1221
DNA (315bp) protein (105aa)
sulfur compound chelating protein SoxZ id=12498608 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfur compound chelating protein SoxZ
Uncharacterized protein {ECO:0000313|EMBL:AAZ96518.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_p_inoc_scaffold_983_4
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1502..2320
DNA (819bp) protein (273aa)
phosphonate ABC transporter, periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein id=12498609 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phosphonate ABC transporter substrate-binding protein; K02044 phosphonate transport system substrate-binding protein Tax=RBG_16_Betaproteobacteria_56_24_curated
phosphonate ABC transporter, periplasmic phosphonate-binding protein
scnpilot_p_inoc_scaffold_983_5
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2317..3663
DNA (1347bp) protein (449aa)
integral membrane sensor signal transduction histidine kinase id=12498610 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
integral membrane sensor signal transduction histidine kinase Tax=CG_Thiomicrospira_01
integral membrane sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_983_6
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3660..5006
DNA (1347bp) protein (449aa)
two component, sigma54 specific, transcriptional regulator, Fis family id=12498611 bin=THIO_MID species=Thioalkalimicrobium cyclicum genus=Thioalkalimicrobium taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
two component, sigma54 specific, transcriptional regulator, Fis family Tax=CG_Thiomicrospira_01
Fis family transcriptional regulator
scnpilot_p_inoc_scaffold_983_7
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5190..5573)
DNA (384bp) protein (128aa)
phage integrase family protein id=12498113 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tyrosine recombinase XerD {ECO:0000313|EMBL:KFB71090.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;
phage integrase family protein
scnpilot_p_inoc_scaffold_983_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5764..6738)
DNA (975bp) protein (325aa)
transposase, IS4 id=12498613 bin=THIO_MID species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Transposase IS4 family protein {ECO:0000313|EMBL:EER59864.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax dela
transposase, IS4
scnpilot_p_inoc_scaffold_983_9
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6784..6972)
DNA (189bp) protein (63aa)
xerD; tyrosine recombinase XerD id=12498614 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Integrase family protein {ECO:0000313|EMBL:EEG09669.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulben
xerD; tyrosine recombinase XerD
scnpilot_p_inoc_scaffold_983_10
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7467..8663)
DNA (1197bp) protein (399aa)
putative transposase id=12494271 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative transposase Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
putative transposase
scnpilot_p_inoc_scaffold_983_11
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8673..9548)
DNA (876bp) protein (292aa)
phage integrase family protein id=12494270 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Integrase family protein {ECO:0000313|EMBL:EGW23805.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter t
phage integrase family protein
scnpilot_p_inoc_scaffold_983_12
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10177..11160
DNA (984bp) protein (328aa)
ABC-type phosphate transport system periplasmic protein; K02040 phosphate transport system substrate-binding protein id=12498550 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ABC-type phosphate transport system periplasmic protein; K02040 phosphate transport system substrate-binding protein Tax=RBG_16_Betaproteobacteria_56_24_curated
ABC-type phosphate transport system periplasmic protein
scnpilot_p_inoc_scaffold_983_13
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11229..11834
DNA (606bp) protein (202aa)
signal peptide id=12498549 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
signal peptide Tax=CG_Rhodocyc_01
signal peptide
scnpilot_p_inoc_scaffold_983_14
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11958..14237
DNA (2280bp) protein (760aa)
ABC transporter permease; K02037 phosphate transport system permease protein id=12498548 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ABC transporter permease; K02037 phosphate transport system permease protein Tax=CG_Rhodocyc_01
ABC transporter permease
scnpilot_p_inoc_scaffold_983_15
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14249..15904
DNA (1656bp) protein (552aa)
membrane protein component of ABC phosphate transporter pstA-like; K02038 phosphate transport system permease protein id=12498547 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
membrane protein component of ABC phosphate transporter pstA-like; K02038 phosphate transport system permease protein Tax=CG_Rhodocyc_01
membrane protein component of ABC phosphate transporter pstA-like
scnpilot_p_inoc_scaffold_983_16
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15948..16775
DNA (828bp) protein (276aa)
phosphate ABC transporter ATPase (EC:3.6.3.27); K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] id=12498546 bin=THIO_MID species=Methyloglobulus morosus genus=Methyloglobulus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phosphate ABC transporter ATPase (EC:3.6.3.27); K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] Tax=CG_Rhodocyc_01
phosphate ABC transporter ATPase (EC:3.6.3.27)
scnpilot_p_inoc_scaffold_983_17
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16796..17614
DNA (819bp) protein (273aa)
ompR1; Transcriptional regulatory protein ompR id=12498545 bin=THIO_MID species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ompR5; Transcriptional regulatory protein ompR Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
ompR1; Transcriptional regulatory protein ompR
scnpilot_p_inoc_scaffold_983_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17913..18788)
DNA (876bp) protein (292aa)
major facilitator superfamily protein id=12498544 bin=THIO_MID species=Acidithiobacillus ferrivorans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEM47879.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;"
scnpilot_p_inoc_scaffold_983_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18785..19360)
DNA (576bp) protein (192aa)
hypothetical protein id=12498543 bin=THIO_MID species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85090.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
scnpilot_p_inoc_scaffold_983_20
RIFOXYD12_FULL_Elusimicrobia_66_9_curated, Elusimicrobia, Bacteria

Not on your lists

comp(19412..19648)
DNA (237bp) protein (79aa)
thiol-disulfide isomerase/thioredoxin id=12498542 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase and thioredoxins family protein Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
thiol-disulfide isomerase/thioredoxin
scnpilot_p_inoc_scaffold_983_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19690..20157)
DNA (468bp) protein (156aa)
hypothetical protein id=12498541 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36862.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella deni
scnpilot_p_inoc_scaffold_983_22
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20200..20619)
DNA (420bp) protein (140aa)
redox protein, regulator of disulfide bond formation id=12498540 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
redox protein, regulator of disulfide bond formation
Redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:BAN36890.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella
scnpilot_p_inoc_scaffold_983_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20659..20955)
DNA (297bp) protein (99aa)
thiol-disulfide isomerase id=12498539 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
thiol-disulfide isomerase and thioredoxins family protein
scnpilot_p_inoc_scaffold_983_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20980..21267)
DNA (288bp) protein (96aa)
hypothetical protein id=12498538 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_p_inoc_scaffold_983_25
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21285..21503)
DNA (219bp) protein (73aa)
hypothetical protein id=12498537 bin=THIO_MID species=Thiomicrospira arctica genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=CG_Thiomicrospira_01
hypothetical protein
scnpilot_p_inoc_scaffold_983_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21527..22582)
DNA (1056bp) protein (352aa)
permease; K07089 id=12498536 bin=THIO_MID species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
permease Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
permease
scnpilot_p_inoc_scaffold_983_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22658..23191)
DNA (534bp) protein (178aa)
sigma-70 family RNA polymerase sigma factor id=12498535 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
sigma-70 family RNA polymerase sigma factor Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
sigma-70 family RNA polymerase sigma factor
scnpilot_p_inoc_scaffold_983_28
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23250..24572)
DNA (1323bp) protein (441aa)
Fis family transcriptional regulator id=12498534 bin=THIO_MID species=Thioalkalivibrio sp. ALJ17 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Fis family transcriptional regulator Tax=CG_Hydro_01
Fis family transcriptional regulator
scnpilot_p_inoc_scaffold_983_29
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24562..25974)
DNA (1413bp) protein (471aa)
periplasmic sensor signal transduction histidine kinase id=12498533 bin=THIO_MID species=Thioalkalivibrio sp. ARh3 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
periplasmic sensor signal transduction histidine kinase Tax=CG_Hydro_01
periplasmic sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_983_30
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25976..26839)
DNA (864bp) protein (288aa)
phosphonate-binding periplasmic protein; K02044 phosphonate transport system substrate-binding protein id=12498532 bin=THIO_MID species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phosphonate ABC transporter periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein Tax=CG_Hydro_01
phosphonate-binding periplasmic protein
Displaying items 1-30 of 34 in total

View Taxonomy