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scnpilot_p_inoc_scaffold_239

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Displaying items 1-30 of 196 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_239_1

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1..123
DNA (123bp) protein (41aa)
Putative uncharacterized protein {ECO:0000313|EMBL:BAH90431.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_p_inoc_scaffold_239_2
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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336..1271
DNA (936bp) protein (312aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H4_9BRAD rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KIC55727.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
trbB; P-type conjugative transfer ATPase TrbB
scnpilot_p_inoc_scaffold_239_3
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1268..1600
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=2 Tax=Oligotropha carboxidovorans RepID=B6JA74_OLICO
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KIC55728.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
trbC; conjugal transfer protein TrbC
scnpilot_p_inoc_scaffold_239_4
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1600..1881
DNA (282bp) protein (94aa)
conjugal transfer protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003144824
Conjugal transfer protein {ECO:0000313|EMBL:KIC55729.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas
conjugal transfer protein TrbB
scnpilot_p_inoc_scaffold_239_5
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1894..4347
DNA (2454bp) protein (818aa)
AAA ATPase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSC9_PARL1 rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:KIC55730.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
conjugal transfer ATPase TrbE
scnpilot_p_inoc_scaffold_239_6
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4350..5117
DNA (768bp) protein (256aa)
conjugal transfer protein TrbJ n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FC56 rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KIC55731.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
conjugal transfer protein TrbJ
scnpilot_p_inoc_scaffold_239_7
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5128..5412
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QQ93_BREDI
Conjugal transfer protein TrbK {ECO:0000313|EMBL:KIC55732.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
hypothetical protein
scnpilot_p_inoc_scaffold_239_8
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5416..6771
DNA (1356bp) protein (452aa)
Conjugal transfer protein TrbL n=2 Tax=Oligotropha carboxidovorans RepID=B6JA69_OLICO rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KIC55733.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
trbL; conjugal transfer protein TrbL
scnpilot_p_inoc_scaffold_239_9
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6768..7457
DNA (690bp) protein (230aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JA68_OLICO rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KIC55734.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
trbF1; conjugal transfer protein TrbF
scnpilot_p_inoc_scaffold_239_10
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7454..8434
DNA (981bp) protein (327aa)
Conjugal transfer protein TrbG n=2 Tax=Oligotropha carboxidovorans RepID=B6JA67_OLICO rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIC55735.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
conjugal transfer protein TrbG/VirB9/CagX
scnpilot_p_inoc_scaffold_239_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8431..9603
DNA (1173bp) protein (391aa)
Conjugal transfer protein TrbI n=2 Tax=Oligotropha carboxidovorans RepID=B6JA66_OLICO rbh
trbI1; conjugal transfer protein TrbI
Conjugal transfer protein TrbI {ECO:0000313|EMBL:AEI05059.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha ca
scnpilot_p_inoc_scaffold_239_12
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9605..9844
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BHI5_OLICM
hypothetical protein
Uncharacterized conserved small protein-like protein {ECO:0000313|EMBL:ADZ68712.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (stra
scnpilot_p_inoc_scaffold_239_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9777..10502)
DNA (726bp) protein (242aa)
Transcriptional regulator, LysR family n=3 Tax=Oligotropha carboxidovorans RepID=B6JA65_OLICO
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEI05061.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligot
scnpilot_p_inoc_scaffold_239_14
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10850..11410)
DNA (561bp) protein (187aa)
zinc-binding dehydrogenase n=1 Tax=Erwinia carotovora RepID=UPI0001A435D3
Zinc-binding dehydrogenase {ECO:0000313|EMBL:KHT30873.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacter
alcohol dehydrogenase zinc-binding domain-containing protein
scnpilot_p_inoc_scaffold_239_15
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11407..12696)
DNA (1290bp) protein (430aa)
Drug resistance transporter Bcr/CflA subfamily n=1 Tax=Rhizobium sp. RepID=L0NND8_RHISP
Drug resistance transporter Bcr/CflA subfamily {ECO:0000313|EMBL:CCF22391.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium g
Bcr/CflA subfamily drug resistance transporter
scnpilot_p_inoc_scaffold_239_16
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13701..14867)
DNA (1167bp) protein (389aa)
UPI0003CF48C9 related cluster n=2 Tax=unknown RepID=UPI0003CF48C9 rbh
transposase
Transposase {ECO:0000313|EMBL:BAB52336.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303
scnpilot_p_inoc_scaffold_239_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15119..16315
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000365F58B
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
hypothetical protein
scnpilot_p_inoc_scaffold_239_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16325..17587
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003627905
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein
scnpilot_p_inoc_scaffold_239_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17580..18305
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036126B2
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
putative ABC transporter ATP-binding protein
scnpilot_p_inoc_scaffold_239_20
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18361..18813
DNA (453bp) protein (151aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF3_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE67944.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source=
cueR; DNA-binding transcriptional activator of copper-responsive regulon genes
scnpilot_p_inoc_scaffold_239_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18810..19028
DNA (219bp) protein (73aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF3_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE67944.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source=
cation translocating P-type ATPase
scnpilot_p_inoc_scaffold_239_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19218..19700
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2L7S3_9PROT
hypothetical protein; K06196 cytochrome c-type biogenesis protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein
scnpilot_p_inoc_scaffold_239_23
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19827..22214
DNA (2388bp) protein (796aa)
Copper-transporting ATPase CopA {ECO:0000313|EMBL:CEG54771.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CEG54771.1};; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomo
heavy metal-transporting ATPase (EC:3.6.3.-)
Heavy metal-transporting ATPase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J2L3_ACIMA
scnpilot_p_inoc_scaffold_239_24
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

22227..22592
DNA (366bp) protein (122aa)
SnoaL-like polyketide cyclase n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A888_DEIPD
SnoaL-like polyketide cyclase
SnoaL-like polyketide cyclase {ECO:0000313|EMBL:AFZ69285.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridi
scnpilot_p_inoc_scaffold_239_25
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22704..23933
DNA (1230bp) protein (410aa)
Major facilitator superfamily MFS_1 n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JKB4_OLICO
MFS transporter
MFS transporter {ECO:0000313|EMBL:AEI08251.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (
scnpilot_p_inoc_scaffold_239_26
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24369..25058
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF5_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS40396.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
scnpilot_p_inoc_scaffold_239_27
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25069..25302
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF6_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII54456.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
scnpilot_p_inoc_scaffold_239_28
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25362..25451
DNA (90bp) protein (30aa)
Signal transduction histidine kinase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I6Z7X9_PSEST
Sensor histidine kinase; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Signal transduction histidine kinase
scnpilot_p_inoc_scaffold_239_29
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26621..28036)
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillacea
Signal transduction histidine kinase
scnpilot_p_inoc_scaffold_239_30
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28033..28251)
DNA (219bp) protein (73aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Sphingobium sp. AP49 RepID=J2D4G6_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:KJB91733.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella a
transcriptional regulator
Displaying items 1-30 of 196 in total

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