ggKbase home page

scnpilot_p_inoc_scaffold_195

Search features with annotation key words

Displaying items 1-30 of 144 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_195_1
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(237..1922)
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AIZ8_9BACT rbh
amidohydrolase Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
amidohydrolase
scnpilot_p_inoc_scaffold_195_2
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1971..2945)
DNA (975bp) protein (325aa)
Arginase/agmatinase/formiminoglutamase n=1 Tax=Rhodobacter sp. SW2 RepID=C8RW24_9RHOB rbh
Arginase/agmatinase/formiminoglutamase {ECO:0000313|EMBL:EEW26767.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rho
putative agmatinase
scnpilot_p_inoc_scaffold_195_3
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3133..3483
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RW25_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW26768.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source=
hypothetical protein
scnpilot_p_inoc_scaffold_195_4
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3489..3908)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YXC3_PARAH
putative thioesterase superfamily protein Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
hypothetical protein
scnpilot_p_inoc_scaffold_195_5
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3967..4758
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase/isomerase family protein n=4 Tax=Rhodobacter capsulatus RepID=D5AQ38_RHOCB rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:KEO51337.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM
enoyl-CoA hydratase/isomerase rbh
scnpilot_p_inoc_scaffold_195_6
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4824..6173)
DNA (1350bp) protein (450aa)
putative FAD-dependent oxidoreductase (EC:1.1.2.4) rbh
FAD linked oxidase domain protein id=2776829 bin=GWF1_Rhodobacteraceae_65_7 species=Sinorhizobium medicae genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
Putative oxidoreductase Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_195_7
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6173..7324)
DNA (1152bp) protein (384aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] Tax=GWF1_Rhodobacteraceae_65_7_curated
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase id=2776821 bin=GWF1_Rhodobacteraceae_65_7 species=SAR116 cluster alpha proteobacterium HIMB100 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
L-lactate dehydrogenase (cytochrome)
scnpilot_p_inoc_scaffold_195_8
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7321..8244)
DNA (924bp) protein (308aa)
Amidinotransferase id=2776819 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
amidinotransferase
scnpilot_p_inoc_scaffold_195_9
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8259..9851)
DNA (1593bp) protein (531aa)
UPI0003CEFF9E related cluster n=1 Tax=unknown RepID=UPI0003CEFF9E rbh
Metal-dependent amidase/aminoacylase/carboxypeptidase {ECO:0000313|EMBL:ESY71468.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobiu
hypothetical protein
scnpilot_p_inoc_scaffold_195_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10023..10907
DNA (885bp) protein (295aa)
Transcriptional regulator, LysR family id=2776815 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
LysR family transcriptional regulator Tax=GWF1_Rhodobacteraceae_65_7_curated
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_195_11
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11046..12071
DNA (1026bp) protein (342aa)
ABC transporter ATP-binding protein id=2776812 bin=GWF1_Rhodobacteraceae_65_7 species=Roseobacter litoralis genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
ABC transporter ATP-binding protein Tax=GWF1_Rhodobacteraceae_65_7_curated
ABC transporter ATP-binding protein
scnpilot_p_inoc_scaffold_195_12
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12129..13244
DNA (1116bp) protein (372aa)
ABC transporter, binding protein id=2776808 bin=GWF1_Rhodobacteraceae_65_7 species=Sinorhizobium medicae genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
ABC transporter binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein Tax=GWF1_Rhodobacteraceae_65_7_curated
ABC transporter binding protein
scnpilot_p_inoc_scaffold_195_13
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13313..14125
DNA (813bp) protein (271aa)
Putative ABC transporter permease protein id=2776805 bin=GWF1_Rhodobacteraceae_65_7 species=Roseobacter litoralis genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
ABC transporter permease Tax=GWF1_Rhodobacteraceae_65_7_curated
ABC transporter permease
scnpilot_p_inoc_scaffold_195_14
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14122..14925
DNA (804bp) protein (268aa)
Putative ABC transporter permease protein id=2776802 bin=GWF1_Rhodobacteraceae_65_7 species=Roseobacter litoralis genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein Tax=GWF1_Rhodobacteraceae_65_7_curated
ABC transporter permease
scnpilot_p_inoc_scaffold_195_15
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14929..16530
DNA (1602bp) protein (534aa)
Thiamine pyrophosphate binding domain-containing protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JRX8_9RHIZ rbh
Thiamine pyrophosphate binding domain-containing protein {ECO:0000313|EMBL:ELT50672.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;"
thiamine pyrophosphate binding domain-containing protein
scnpilot_p_inoc_scaffold_195_16
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16615..17307
DNA (693bp) protein (231aa)
Metallophosphoesterase id=2541962 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
Metallophosphoesterase; K06953 Tax=GWF1_Rhodobacteraceae_65_7_curated
ICC-like putative phosphoesterase
scnpilot_p_inoc_scaffold_195_17
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17271..18125)
DNA (855bp) protein (285aa)
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
Response regulator receiver protein id=2541966 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
response regulator of the LytR/AlgR family
scnpilot_p_inoc_scaffold_195_18
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18193..19083)
DNA (891bp) protein (297aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolat
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD id=2541969 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_195_19
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19095..19973)
DNA (879bp) protein (293aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5)
Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EJL7_9RHOB rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter
scnpilot_p_inoc_scaffold_195_20
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19993..20286)
DNA (294bp) protein (98aa)
chorismate mutase (EC:5.4.99.5); K04782 isochorismate pyruvate lyase [EC:4.2.99.21] Tax=GWF1_Rhodobacteraceae_65_7_curated
Chorismate mutase family protein id=2541972 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter capsulatus genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
chorismate mutase
scnpilot_p_inoc_scaffold_195_21
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20360..22036)
DNA (1677bp) protein (559aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1408890 sp
Formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EJ48_9RHOB rbh
scnpilot_p_inoc_scaffold_195_22
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22317..23702
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus B6 RepID=V8GVT4_RHOCA rbh
hemolysin-type calcium-binding repeat family protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ETE52353.1}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsu
scnpilot_p_inoc_scaffold_195_23
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23692..24471)
DNA (780bp) protein (260aa)
trans-aconitate 2-methyltransferase (EC:2.1.1.144)
Trans-aconitate methyltransferase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EIV4_9RHOB rbh
Trans-aconitate methyltransferase {ECO:0000313|EMBL:ESW60164.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodoba
scnpilot_p_inoc_scaffold_195_24
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24468..26372)
DNA (1905bp) protein (635aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.6); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=GWF1_Rhodobacteraceae_65_7_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH id=2541980 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_195_25
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26450..27721)
DNA (1272bp) protein (424aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=GWF1_Rhodobacteraceae_65_7_curated
tilS; tRNA(Ile)-lysidine synthase (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase id=2541983 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_195_26
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27718..28527)
DNA (810bp) protein (270aa)
Tol-pal system protein YbgF id=2541985 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
hypothetical protein
scnpilot_p_inoc_scaffold_195_27
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28532..29059)
DNA (528bp) protein (176aa)
OmpA domain protein id=2541988 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
OmpA domain-containing protein; K03640 peptidoglycan-associated lipoprotein Tax=GWF1_Rhodobacteraceae_65_7_curated
OmpA domain-containing protein
scnpilot_p_inoc_scaffold_195_28
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29154..30479)
DNA (1326bp) protein (442aa)
Protein TolB id=2542039 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
tolB; translocation protein TolB; K03641 TolB protein Tax=GWF1_Rhodobacteraceae_65_7_curated
tolB; translocation protein TolB
scnpilot_p_inoc_scaffold_195_29
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30637..31866)
DNA (1230bp) protein (410aa)
TonB domain-containing protein id=2542043 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
Cell division and transport-associated protein TolA
scnpilot_p_inoc_scaffold_195_30
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31877..32374)
DNA (498bp) protein (166aa)
Biopolymer transport protein ExbD/TolR id=2542048 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR Tax=GWF1_Rhodobacteraceae_65_7_curated
biopolymer transport protein ExbD/TolR
Displaying items 1-30 of 144 in total

View Taxonomy