ggKbase home page

scnpilot_p_inoc_scaffold_44

Search features with annotation key words

Displaying items 211-240 of 427 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_44_211
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(238460..240805)
DNA (2346bp) protein (782aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000380C2D8 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN45223.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibact
hypothetical protein
scnpilot_p_inoc_scaffold_44_212
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(240893..241159)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00037EA558
Uncharacterized protein {ECO:0000313|EMBL:GAN45222.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibact
hypothetical protein
scnpilot_p_inoc_scaffold_44_213
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

241218..241727
DNA (510bp) protein (170aa)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5945B
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit
scnpilot_p_inoc_scaffold_44_214
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

241724..242878
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382C16E rbh
phosphoribosylaminoimidazole carboxylase
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU36120
scnpilot_p_inoc_scaffold_44_215
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(242942..243520)
DNA (579bp) protein (193aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadac
superoxide dismutase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3858C rbh
superoxide dismutase
scnpilot_p_inoc_scaffold_44_216
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

243684..244001
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376596A
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sedimi
hypothetical protein
scnpilot_p_inoc_scaffold_44_217
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

244001..244759
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000367DA15
Short-chain dehydrogenase {ECO:0000313|EMBL:KJV30957.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeoj
short-chain dehydrogenase
scnpilot_p_inoc_scaffold_44_218
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

244790..245398
DNA (609bp) protein (203aa)
Multiple antibiotic transporter n=2 Tax=Rhodanobacter denitrificans RepID=M4NGJ6_9GAMM
multiple antibiotic transporter Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
multiple antibiotic transporter
scnpilot_p_inoc_scaffold_44_219
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

245652..247391
DNA (1740bp) protein (580aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000369B048 rbh
putative hemolysin
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_p_inoc_scaffold_44_220
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247599..250799
DNA (3201bp) protein (1067aa)
TonB-dependent receptor plug n=1 Tax=mine drainage metagenome PF3_9ZZZZ">RepID=T0YPF3_9ZZZZ rbh
Oar protein {ECO:0000313|EMBL:GAN45219.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis
Oar protein
scnpilot_p_inoc_scaffold_44_221
unknown

Not on your lists

comp(250875..251381)
DNA (507bp) protein (169aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_44_222
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252050..253447
DNA (1398bp) protein (466aa)
LOG family protein ygdH n=1 Tax=Dyella ginsengisoli RepID=UPI000349852A rbh
LOG family protein
LOG family protein {ECO:0000313|EMBL:AHX12308.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_p_inoc_scaffold_44_223
unknown

Not on your lists

253900..254433
DNA (534bp) protein (178aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_44_224
unknown

Not on your lists

comp(254967..255149)
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_44_225
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(255850..256398)
DNA (549bp) protein (183aa)
Type IV fimbrial biogenesis protein FimT n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BY09_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_p_inoc_scaffold_44_226
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

256712..258739
DNA (2028bp) protein (676aa)
excinuclease ABC subunit B n=1 Tax=Rudaea cellulosilytica RepID=UPI000379B436
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_0
excinuclease ABC subunit B
scnpilot_p_inoc_scaffold_44_227
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

259412..259963
DNA (552bp) protein (184aa)
NADPH-dependent FMN reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQV2_ALIDB
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:AEB84988.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
scnpilot_p_inoc_scaffold_44_228
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

260401..262533
DNA (2133bp) protein (711aa)
Glr0280 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NNX8_GLOVI rbh
hypothetical protein
Glr0280 protein {ECO:0000313|EMBL:BAC88221.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
scnpilot_p_inoc_scaffold_44_229
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(262624..263787)
DNA (1164bp) protein (388aa)
Ferri-bacillibactin esterase BesA n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MYE7_CORCM
besA; Ferri-bacillibactin esterase BesA
Ferri-bacillibactin esterase BesA {ECO:0000313|EMBL:AFE08189.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" s
scnpilot_p_inoc_scaffold_44_230
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

264141..266045
DNA (1905bp) protein (635aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWF1_Xanthomonadales_69_6_curated
threonyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI000364302E rbh
threonyl-tRNA synthetase
scnpilot_p_inoc_scaffold_44_231
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

266154..266618
DNA (465bp) protein (155aa)
translation initiation factor IF-3 n=1 Tax=Rudaea cellulosilytica RepID=UPI00036FEDB4
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonada
translation initiation factor IF-3
scnpilot_p_inoc_scaffold_44_232
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


266781..266978
DNA (198bp) protein (66aa)
Ribosomal protein L35 n=1 Tax=mine drainage metagenome RepID=T1A7E8_9ZZZZ
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lys
LSU ribosomal protein L35P
scnpilot_p_inoc_scaffold_44_233
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


266994..267353
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Rudaea cellulosilytica RepID=UPI000375EEA3
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dye
scnpilot_p_inoc_scaffold_44_234
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


267565..268560
DNA (996bp) protein (332aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
phenylalanyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034693ED rbh
phenylalanyl-tRNA synthetase
scnpilot_p_inoc_scaffold_44_235
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


268601..270973
DNA (2373bp) protein (791aa)
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003693E00 rbh
scnpilot_p_inoc_scaffold_44_236
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

270975..271280
DNA (306bp) protein (102aa)
Integration host factor subunit alpha n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXB8_9GAMM
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1163408 species="Bacteria; Proteobacte
ihfA; integration host factor subunit alpha
scnpilot_p_inoc_scaffold_44_237
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

271255..271611
DNA (357bp) protein (119aa)
MerR family transcriptional regulator n=1 Tax=Rudaea cellulosilytica RepID=UPI00036731E9
Putative transcriptional regulator {ECO:0000313|EMBL:EIL96015.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhod
putative transcriptional regulator
scnpilot_p_inoc_scaffold_44_238
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

272925..273869
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037719B3
Uncharacterized protein {ECO:0000313|EMBL:EYR65814.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici
bacterial regulatory helix-turn-helix s, AraC family protein
scnpilot_p_inoc_scaffold_44_239
unknown

Not on your lists

273866..274507
DNA (642bp) protein (214aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_44_240
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

274568..275530
DNA (963bp) protein (321aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad
proline iminopeptidase n=1 Tax=Dyella ginsengisoli RepID=UPI00034CA3B0
proline iminopeptidase
Displaying items 211-240 of 427 in total

View Taxonomy