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scnpilot_p_inoc_scaffold_44_60

Organism: SCNpilot_P_inoc_Xanthomonadales_65_40

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(61709..62290)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, TIGR02999 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DR52_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 39.9
  • Coverage: 193.0
  • Bit_score: 142
  • Evalue 5.20e-31
RNA polymerase sigma 70 {ECO:0000313|EMBL:EYR68784.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici similarity UNIPROT
DB: UniProtKB
  • Identity: 45.3
  • Coverage: 192.0
  • Bit_score: 156
  • Evalue 3.80e-35
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 39.9
  • Coverage: 193.0
  • Bit_score: 142
  • Evalue 1.50e-31

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Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGACCGACGACATCGCACCCGACATCACCGCACTGCTGGGACGCTGGCGCGACGGAGACCGTGGGGCCGAAAACGAGCTGTTCGATGCCATCTACCCGGCCCTGCGCGGCATCGCCAGCAAGCAGCTGAACGGCCAGCACGATCTGACCTTGAACCCGACCGAGCTCGCTCACGAGACGTATGCGCGGCTCAGCCGCAACGCGAGCATCGACTATCAGGATCGCGGCCATTTCTTTGCCGTCGCCGCGCGGGCGGCGCGGCATTTCATCGTCGACTACCTGCGCAGCCGCGGCAGCGACAAGCGCGGCAGCGGCATGCCGTTCGTCGCGCTGGACGAAGTCGCCGACGAGCTGCCCGATTACCGCATCGACCTCAGCGTGGACTGGCTGGCCGTACACGCCGCGCTGAGCGAGCTGGAACGCCGGGACGAGCACAGCGCGCGCATCGTCGAGCTCAAGTTCTTTTCCGGCCTGACCACCGAGGAAATCGCCGATGCGGTCGGCATATCGCGGGCGACGGTCGTGCGCGACTGGCGCTTCGCCAAGGCCTGGCTCGCCGGCAAGCTGCGCAACGAACGCTGA
PROTEIN sequence
Length: 194
MTDDIAPDITALLGRWRDGDRGAENELFDAIYPALRGIASKQLNGQHDLTLNPTELAHETYARLSRNASIDYQDRGHFFAVAARAARHFIVDYLRSRGSDKRGSGMPFVALDEVADELPDYRIDLSVDWLAVHAALSELERRDEHSARIVELKFFSGLTTEEIADAVGISRATVVRDWRFAKAWLAGKLRNER*