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scnpilot_p_inoc_scaffold_44_62

Organism: SCNpilot_P_inoc_Xanthomonadales_65_40

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(63966..64556)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029S3_SOLUE similarity UNIREF
DB: UNIREF100
  • Identity: 42.9
  • Coverage: 191.0
  • Bit_score: 147
  • Evalue 1.70e-32
RNA polymerase sigma 70 {ECO:0000313|EMBL:EYR68784.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 189.0
  • Bit_score: 163
  • Evalue 4.10e-37
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 42.9
  • Coverage: 191.0
  • Bit_score: 147
  • Evalue 4.70e-33

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Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 591
ATGAGCGGCAGCGACATCGACATCACGGCGCTGCTGGCGCGCTGGCGCAGCGGGGACCGCGACGCGGAGAATGCGCTGATGACCGCGGTCTACCCGCTGCTGCGCGAACTGGCCCAGCTGCGCCTGCGCCGCGCCGGCGGCAACCCGACCCTGAGCGCGACCGAACTCGTCAACGAAGCCTATGCGCGGCTGGCCCGCGGCGACGGCGTCGACTACCAGAACCGCACGCACTTCTTCGCCGTCGCCGCCCGCGCGATCCGCAATTTCATCGTCGACTACCTGCGCGCGCGCGGCAGCGAGAAGCGCGGCGGCGGCCTGCCGTTCGTCGAGCTGGAGCGGGCCGACGAAACGCCGGGCGATGATCTGATCGACCTGCGCACGAACTGGCTCGCCGTGCATGAAGCGCTGAACCGACTGGAAACCATCGACCGCGACTGCGCCCAGATGGTCGAACTCAAGTTCTTTTCCGGCCTGACCACCGAGGAAATCGCCGAGGTCCGCGGCGTCTCGCGCGCGACCGTCGTGCGCAGCTGGCGCTTCGCCAAGGCCTGGCTGCTGGAACAGCTCGCGCCGCACGGCGGCGAAGGCTGA
PROTEIN sequence
Length: 197
MSGSDIDITALLARWRSGDRDAENALMTAVYPLLRELAQLRLRRAGGNPTLSATELVNEAYARLARGDGVDYQNRTHFFAVAARAIRNFIVDYLRARGSEKRGGGLPFVELERADETPGDDLIDLRTNWLAVHEALNRLETIDRDCAQMVELKFFSGLTTEEIAEVRGVSRATVVRSWRFAKAWLLEQLAPHGGEG*