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scnpilot_p_inoc_scaffold_548_8

Organism: SCNpilot_P_inoc_Xanthomonadales_65_40

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(8118..9995)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein, VC_A0110 family n=1 Tax=Variovorax paradoxus B4 RepID=T1X424_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 51.8
  • Coverage: 629.0
  • Bit_score: 613
  • Evalue 2.60e-172
type VI secretion protein, VC_A0110 family similarity KEGG
DB: KEGG
  • Identity: 51.7
  • Coverage: 629.0
  • Bit_score: 611
  • Evalue 2.10e-172
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:AGU47363.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va similarity UNIPROT
DB: UniProtKB
  • Identity: 51.7
  • Coverage: 629.0
  • Bit_score: 611
  • Evalue 1.10e-171

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1878
GTGGATCCGCGCCTGATCGGCTACTACAACACCGAGCTGAACTACCTGCGCGAACTCGGCGCCGAATTCGCCGCGGCCAATCCGAAGATCGCCGCGCGGCTGGGCATGCGCGACATCGAGGTCGCCGATCCCTACGTCGAACGCCTGCTCGAAGGCTTCAGCTTCCTGACCGCGCGCATCCAGCTCAAGATGGACGCGGAGTTCCCGCGCTTCTCGCAGCGCCTGCTCGAAGTCGTCTATCCCAACTATCTGGCGCCTACGCCGGCCATGTGCATCGTCCAGTTCACGCCGGGCGAGATGACCGGCAACCAGGGCGACTCGTTCCGCATCGGCCGCGGCGAGCGCCTGCGCGCGCCGAGTCTCGTCGAAGGGCAGAACGGCTGCGAATTCCGTACCGCCCACGACGTGGACCTCTGGCCGTTGCGCATCGCCGCCGCGCGTTTCGAGGGCGTGCCGACCGACGTGCGCGTGAACCGGCTGCGGCAGGATCTGCCGGTCAAGGCCAGCTTGCGCCTGAACTTCCAGTTCAATGCGCCGCTGAGCGGCAAGAATCCGCCGCCGGATCGCCTGTCCCTGCATCTGGCCGGCAGCCCGCACATCACCTCGCGGCTGCACGAGCTGCTCTGCGGCCACGTGCTCGGCGTGTCGGTGCGCGCGCGCAGCAAGAAGCAGGTCGGCGAATGGCGCCAGCTCGGCGCCGCGGCCGTGCAGCCCGAAGGTTTCGACGACACGCAGGCGCTGCTGCCGTACAACGGCCGCGGCTTCCAGGGCTACCGGCTGCTGCACGAATACTTCGCGTTCCCGGCGCGCTTCCATTTCGTCGCGCTGGAAGGGCTGCGCGCGGCGCTGCAGGGTGTCGAGGCGCTGGACGGCTTCGAGGTCAGCATCCTGCTCGACCAGGAAGTCGCCGATCTCGAAACCGTGGTCGACGCCGCGCATTTCCTGCTGTTCTGCACCCCGGCGGTGAACCTGATCTCGATGCGCTCGGACCGCATCCAGGTCGGCGACAGCCGCTACGAGCTGCACGTCGTGCCGGATCGCACGCATCCGCTGAACTACGAGGTCTACAGCATCGAGCAGGTCGAAGGCTTCGGCCGCGACAATGCGATCGAGGCGAAATTCCGTCCGTTCTATTCCAGCCTCGTCGGCGACCGCGGCAACCACGGCACCTATTTCACGGTGCGCCGCGAACCGCGCCTGGCGTCGAGCACGTCGGCGCGCCACGGCGCGCGTACGACCTACCTCGGCTCGGAAGTGTTCCTCTCGCTCGTGAACCAGCATGAGGCGCCGTACGGCTCTGGCCTGCGCCAGCTCGGCGTCGACATGACCGTGACCAACCGCGACCTCGCGATGCTCATGGCCGTGGGCGGCCAGCACGATCTCGTGCCGGTGGATTCGGTGCCGGTCAGCGGCGTGCGCGTGCTGCAGGGTCCGACGCGGCCGGTGTCGGCCGTGCCCGAAGGCGAGATCAGCTGGCGCCTGATCAGTCATCTGGGGCTCAACTATCAGACCCTGACCGACCTGAGCCCGGAGCAGGGCGCCCTGGCGCTGCGCGAATTGCTGAGCCTCTACACCGTGCTCGGCGACGCGGCCGTCGCGCGCCAGGCCAATGCGGTACTGCAGACGCGGCTGAATCCGATCACGCGGCGCCTGCCCGGCGCCGGTCCGATCACGTTCGGCCGCGGCGTCGGCATCGACGTGACGATCGACGAAAGCCATTTCGCCGGCACGAGCCCGTATCTGTTCGGCGCCGTGCTCGAACAGTTCCTCGCGCGGCATGTCGCATTGAACACGTTCACCGAGACGCGCCTGATCAGCGCGCAGCGCGGACAGCTCGGCCACTGGGCGCCGCGCTTCGGACGCAGGCCGGTCGCATGA
PROTEIN sequence
Length: 626
VDPRLIGYYNTELNYLRELGAEFAAANPKIAARLGMRDIEVADPYVERLLEGFSFLTARIQLKMDAEFPRFSQRLLEVVYPNYLAPTPAMCIVQFTPGEMTGNQGDSFRIGRGERLRAPSLVEGQNGCEFRTAHDVDLWPLRIAAARFEGVPTDVRVNRLRQDLPVKASLRLNFQFNAPLSGKNPPPDRLSLHLAGSPHITSRLHELLCGHVLGVSVRARSKKQVGEWRQLGAAAVQPEGFDDTQALLPYNGRGFQGYRLLHEYFAFPARFHFVALEGLRAALQGVEALDGFEVSILLDQEVADLETVVDAAHFLLFCTPAVNLISMRSDRIQVGDSRYELHVVPDRTHPLNYEVYSIEQVEGFGRDNAIEAKFRPFYSSLVGDRGNHGTYFTVRREPRLASSTSARHGARTTYLGSEVFLSLVNQHEAPYGSGLRQLGVDMTVTNRDLAMLMAVGGQHDLVPVDSVPVSGVRVLQGPTRPVSAVPEGEISWRLISHLGLNYQTLTDLSPEQGALALRELLSLYTVLGDAAVARQANAVLQTRLNPITRRLPGAGPITFGRGVGIDVTIDESHFAGTSPYLFGAVLEQFLARHVALNTFTETRLISAQRGQLGHWAPRFGRRPVA*