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scnpilot_p_inoc_scaffold_1995_1

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: comp(3..365)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F648B similarity UNIREF
DB: UNIREF100
  • Identity: 72.7
  • Coverage: 121.0
  • Bit_score: 182
  • Evalue 2.20e-43
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:CDY77133.1}; RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KDR41946.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Bu similarity UNIPROT
DB: UniProtKB
  • Identity: 71.1
  • Coverage: 121.0
  • Bit_score: 176
  • Evalue 2.20e-41
FecI-like sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 71.1
  • Coverage: 121.0
  • Bit_score: 174
  • Evalue 1.70e-41

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Taxonomy

Burkholderia glathei → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 363
ATGAACGATCACACCCTGGACAGCTTCCTGCGCCTGCGGCCCCGGCTGCGGGGCATCGCCTACCGCATGCTGGGCTCGGCCGCCGACGCCGACGAGGTGGTGCAGGACGCCTGGCTGCGCTGGCACGGCACCGAGCACGCGTCGGTGGACAACGCCGAGGCCTGGCTGGTCTCCGTCACCACGCGCCTGGCCATCGACCGGCTGCGCGCGGCCCAGTCGCGGCGCGAGCAGTACGTGGGCACCTGGCTGCCCGAGCCCATCCTCACCGAGGCCGAGGCGCCGCACACGCCCGAGCAGATGCTGGAGCGGGCCGACCAGCTCTCGCTCGCCTTCCTCGCGGTGCTCGAGCGCCTGGCGCCCGAG
PROTEIN sequence
Length: 121
MNDHTLDSFLRLRPRLRGIAYRMLGSAADADEVVQDAWLRWHGTEHASVDNAEAWLVSVTTRLAIDRLRAAQSRREQYVGTWLPEPILTEAEAPHTPEQMLERADQLSLAFLAVLERLAPE