ggKbase home page

scnpilot_p_inoc_scaffold_4033_4

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: comp(1920..2507)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA9_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 195.0
  • Bit_score: 356
  • Evalue 1.80e-95
  • rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; H similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 195.0
  • Bit_score: 356
  • Evalue 2.50e-95
rimM; RimM protein, required for 16S rRNA processing similarity KEGG
DB: KEGG
  • Identity: 64.9
  • Coverage: 194.0
  • Bit_score: 241
  • Evalue 2.40e-61

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 588
ATGTCCGCGGCCCTGGTCGCGTCGGCCCTGCCGGCCGATGCCGTTGAACTGGGCCGCGTCCAGGATGCCTGGGGCATCAAGGGCTGGGTCCGCATCCAGCCCCACAGCGCCGACACCGACGCGCTGTTCGCCAGCCAGGACTGGTACCTCCAGCCGCCCGAAGCCTGCTTCGCGCGCGGCTTTTCTGCTTTCAAGGGCTGCGTGGCCGTGCGGGTGGCCGAGCTCAAGGCCCACGCCGACGGCCTGGTGGCCCGGCTCGAGGGCGTCGACGACCGCAACCTGGCGGAGTCGCTCAAGGGCTGCCGCATCAGCCTGCCGCGCAGCGCCTTTCCCGAGCCCGAAGAGGGCGAGTACTACTGGGTCGACCTGATCGGCCTGCGGGTGGTCAACCGCGAGGGCGAGGACCTGGGCGTGGTGCGCGACCTCGTGAGCACGGGACCGACCTCGGTGCTGGTGCTCGAGTACCTCGAGACGGTGGACGGCGAGGAGCGCGCCGCCGAGCGGATGATCCCCTTCGTGGCCGCCTACATCGACGACGTGGACCGCGCCGCTGGGCGCATCACCGCCGACTGGCAAAAAGACTACTGA
PROTEIN sequence
Length: 196
MSAALVASALPADAVELGRVQDAWGIKGWVRIQPHSADTDALFASQDWYLQPPEACFARGFSAFKGCVAVRVAELKAHADGLVARLEGVDDRNLAESLKGCRISLPRSAFPEPEEGEYYWVDLIGLRVVNREGEDLGVVRDLVSTGPTSVLVLEYLETVDGEERAAERMIPFVAAYIDDVDRAAGRITADWQKDY*