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scnpilot_p_inoc_scaffold_4707

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4707_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..456
DNA (456bp) protein (152aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00176}; Short=SerRS {ECO:0000255|HAMAP-Rule:MF_0
seryl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00037294DB
scnpilot_p_inoc_scaffold_4707_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(472..1923)
DNA (1452bp) protein (484aa)
murein transglycosylase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E85D8 rbh
extracellular solute-binding protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
extracellular solute-binding protein
scnpilot_p_inoc_scaffold_4707_3
Xanthomonas gardneri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2542..4926
DNA (2385bp) protein (795aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003788A03 rbh
Preprotein translocase subunit SecA (ATPase, RNA helicase) {ECO:0000313|EMBL:EGD17605.1}; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xantho
SEC-C motif domain-containing protein
scnpilot_p_inoc_scaffold_4707_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5187..5444)
DNA (258bp) protein (86aa)
Phage transcriptional regulator, AlpA n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKX6_VARPS
phage transcriptional regulator AlpA
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:ACS21127.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
scnpilot_p_inoc_scaffold_4707_5

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comp(5550..5783)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003638244
Uncharacterized protein {ECO:0000313|EMBL:CBH97701.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4707_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5780..7054)
DNA (1275bp) protein (425aa)
trbI; Conjugative transfer protein TrbI; K03195 type IV secretion system protein VirB10 id=12498576 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
trbI; Conjugative transfer protein TrbI; K03195 type IV secretion system protein VirB10 Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein TrbI
scnpilot_p_inoc_scaffold_4707_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7057..8070)
DNA (1014bp) protein (338aa)
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 id=12498577 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
conjugal transfer protein TrbG
scnpilot_p_inoc_scaffold_4707_8
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8067..8774)
DNA (708bp) protein (236aa)
conjugal transfer protein TrbF n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D7A3 rbh
conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AJP47671.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1
scnpilot_p_inoc_scaffold_4707_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8801..9736)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003826C00
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein TrbL
scnpilot_p_inoc_scaffold_4707_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9682..10122)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003826C00
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein TrbL
scnpilot_p_inoc_scaffold_4707_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10126..10389)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370D5A2
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_p_inoc_scaffold_4707_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10398..11126)
DNA (729bp) protein (243aa)
conjugal transfer protein TrbJ n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0BFB
conjugal transfer protein TrbJ Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein TrbJ
scnpilot_p_inoc_scaffold_4707_13
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11123..13021)
DNA (1899bp) protein (633aa)
conjugal transfer protein TrbE n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D4CA
conjugal transfer protein TrbE
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP47674.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1
Displaying 13 items

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