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scnpilot_p_inoc_scaffold_121

Search features with annotation key words

Displaying items 1-30 of 210 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_121_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..258
DNA (258bp) protein (86aa)
Conjugal transfer protein TrbF n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT27_ALIDB
conjugal transfer protein TrbF
Conjugal transfer protein {ECO:0000313|EMBL:ABM43045.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="A
scnpilot_p_inoc_scaffold_121_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255..1247
DNA (993bp) protein (331aa)
P-type conjugative transfer protein TrbG n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV26_ALIDB rbh
p-type conjugative transfer protein trbg
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:ADV00558.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycli
scnpilot_p_inoc_scaffold_121_3
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1250..2521
DNA (1272bp) protein (424aa)
Conjugation TrbI family protein n=1 Tax=Ralstonia sp. PBA RepID=I9W3N0_9RALS
Conjugation TrbI family protein {ECO:0000313|EMBL:EIZ03004.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp.
conjugation TrbI family protein
scnpilot_p_inoc_scaffold_121_4
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2518..2766
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WJB6_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EIZ03005.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
conjugal transfer protein
scnpilot_p_inoc_scaffold_121_5
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3086..4330)
DNA (1245bp) protein (415aa)
MFS transporter n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IEM7_9BURK rbh
MFS transporter {ECO:0000313|EMBL:ESJ11689.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
major facilitator transporter
scnpilot_p_inoc_scaffold_121_6
unknown

Not on your lists

comp(4443..4622)
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_121_7
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4697..5362
DNA (666bp) protein (222aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=1519190
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HVJ4_BORPD
ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase
scnpilot_p_inoc_scaffold_121_8
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5387..6052)
DNA (666bp) protein (222aa)
Transcriptional regulator, GntR family n=1 Tax=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) RepID=Q0B7L1_BURCM
GntR family transcriptional regulator {ECO:0000313|EMBL:KKB65139.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkh
GntR family transcriptional regulator
scnpilot_p_inoc_scaffold_121_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6138..7013
DNA (876bp) protein (292aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (EC:4.1.1.68)
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Variovorax paradoxus RepID=UPI00036B3CE4 rbh
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase Tax=RBG_16_Betaproteobacteria_64_18_curated
scnpilot_p_inoc_scaffold_121_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7010..7885
DNA (876bp) protein (292aa)
Polysaccharide deacetylase family protein n=1 Tax=Roseovarius sp. 217 RepID=A3W3G0_9RHOB
polysaccharide deacetylase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
polysaccharide deacetylase
scnpilot_p_inoc_scaffold_121_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7914..8885
DNA (972bp) protein (324aa)
Extra-cytoplasmic solute receptor n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EYG5_CUPNN
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
extra-cytoplasmic solute receptor
scnpilot_p_inoc_scaffold_121_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8939..9358
DNA (420bp) protein (140aa)
4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
Carboxymuconolactone decarboxylase n=2 Tax=Delftia RepID=A9BZA6_DELAS
Carboxymuconolactone decarboxylase family protein {ECO:0000313|EMBL:KFJ11740.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="
scnpilot_p_inoc_scaffold_121_13
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9495..10247
DNA (753bp) protein (251aa)
Maleate isomerase {ECO:0000256|HAMAP-Rule:MF_00943}; EC=5.2.1.1 {ECO:0000256|HAMAP-Rule:MF_00943};; Maleate cis-trans isomerase {ECO:0000256|HAMAP-Rule:MF_00943}; TaxID=391735 species="Bacteria; Prote
Maleate isomerase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WQK3_VEREI rbh
Asp/Glu racemase
scnpilot_p_inoc_scaffold_121_14
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10296..11192)
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J1EET6_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJE50861.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_121_15
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11222..11845
DNA (624bp) protein (208aa)
Isochorismatase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0AY42_ALCFA
Isochorismatase {ECO:0000313|EMBL:EJC61442.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp.
isochorismatase
scnpilot_p_inoc_scaffold_121_16
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12107..13489)
DNA (1383bp) protein (461aa)
lysC; aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448, ECO:0000313|EMBL:CAP43790.1}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448, ECO:0000313|EMBL:CAP43790.1};; TaxID=340100 species="Bacteria; Proteobacteria; Be
Aspartokinase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HXJ3_BORPD rbh
scnpilot_p_inoc_scaffold_121_17
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13569..15005)
DNA (1437bp) protein (479aa)
tilS; tRNA(Ile)-lysidine synthase (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine
tRNA(Ile)-lysidine synthase n=1 Tax=Ralstonia solanacearum RepID=D8NUW1_RALSL rbh
scnpilot_p_inoc_scaffold_121_18
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14974..15942)
DNA (969bp) protein (323aa)
accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=2 Tax=Bordetella holmesii RepID=M5NR76_9BORD rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
scnpilot_p_inoc_scaffold_121_19
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16096..16773)
DNA (678bp) protein (226aa)
DNA-3-methyladenine glycosylase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SUG7_ALCXX rbh
DNA-3-methyladenine glycosylase {ECO:0000313|EMBL:EGP48283.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobac
DNA-3-methyladenine glycosylase
scnpilot_p_inoc_scaffold_121_20
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16807..18189)
DNA (1383bp) protein (461aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=5 Tax=Bordetella RepID=SYC_BORBR rbh
scnpilot_p_inoc_scaffold_121_21
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18328..19125
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVA8_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC18750.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (s
scnpilot_p_inoc_scaffold_121_22
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19122..19688
DNA (567bp) protein (189aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; Flags: Precursor;; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z1A4_DESAF
Peptidylprolyl isomerase
scnpilot_p_inoc_scaffold_121_23
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19685..20188
DNA (504bp) protein (168aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X164_9BURK
peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family protein
scnpilot_p_inoc_scaffold_121_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20348..21076
DNA (729bp) protein (243aa)
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylgluco
UDP-2,3-diacylglucosamine hydrolase n=2 Tax=Bordetella bronchiseptica RepID=K4T3N7_BORBO rbh
scnpilot_p_inoc_scaffold_121_25
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21111..22259)
DNA (1149bp) protein (383aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JK78_9PSED
Putative uncharacterized protein {ECO:0000313|EMBL:EHK68499.1}; TaxID=1112217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomo
3-methylitaconate isomerase
scnpilot_p_inoc_scaffold_121_26
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22246..22992)
DNA (747bp) protein (249aa)
lasT; tRNA/rRNA methyltransferase (EC:2.1.1.-)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256
Putative tRNA/rRNA methyltransferase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KX25_BORA1 rbh
scnpilot_p_inoc_scaffold_121_27
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23080..23886
DNA (807bp) protein (269aa)
Inositol-1-monophosphatase (EC:3.1.3.25)
Inositol-1-monophosphatase {ECO:0000313|EMBL:CCH10123.1}; EC=3.1.3.25 {ECO:0000313|EMBL:CCH10123.1};; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenace
Inositol-1-monophosphatase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4Y2W6_ALCXX rbh
scnpilot_p_inoc_scaffold_121_28
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24032..24844
DNA (813bp) protein (271aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
uppP; undecaprenyl-diphosphatase UppP (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Achromobacter piechaudii HLE RepID=J4QPX8_9BURK
scnpilot_p_inoc_scaffold_121_29
Marinomonas profundimaris, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24882..25562
DNA (681bp) protein (227aa)
GTP cyclohydrolase-2 {ECO:0000256|HAMAP-Rule:MF_00179}; EC=3.5.4.25 {ECO:0000256|HAMAP-Rule:MF_00179};; GTP cyclohydrolase II {ECO:0000256|HAMAP-Rule:MF_00179}; TaxID=1208321 species="Bacteria; Proteo
ribA; GTP cyclohydrolase II (EC:3.5.4.25)
UPI0003D62A6F related cluster n=1 Tax=unknown RepID=UPI0003D62A6F
scnpilot_p_inoc_scaffold_121_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25572..27011
DNA (1440bp) protein (480aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Variovorax sp. CF313 RepID=J2K3V5_9BURK
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:EJL67933.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
phospholipase D/transphosphatidylase
Displaying items 1-30 of 210 in total

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