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scnpilot_p_inoc_scaffold_407

Search features with annotation key words

Displaying items 31-60 of 282 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_407_31
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38189..39460
DNA (1272bp) protein (424aa)
D-amino acid dehydrogenase small subunit (EC:1.4.99.1)
Amino acid dehydrogenase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J420_9BURK rbh
Amino acid dehydrogenase {ECO:0000313|EMBL:ESJ24972.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. H
scnpilot_p_inoc_scaffold_407_32
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39464..40990
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R509_CUPTR rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ69391.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwane
scnpilot_p_inoc_scaffold_407_33
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41012..41749)
DNA (738bp) protein (246aa)
ABC transporter, ATP-binding protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XDT7_9BURK rbh
ABC transporter ATP-binding protein
Probable ATP-binding ABC transporter protein {ECO:0000313|EMBL:CCJ63551.1}; TaxID=568706 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="B
scnpilot_p_inoc_scaffold_407_34
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41778..42494
DNA (717bp) protein (239aa)
Acyl-CoA thioesterase {ECO:0000313|EMBL:CRD87558.1}; EC=3.1.1.1 {ECO:0000313|EMBL:CRD87558.1};; EC=3.1.2.- {ECO:0000313|EMBL:CRD87558.1};; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacter
tesA; acyl-CoA thioesterase (EC:3.1.2.-)
GDSL-like protein n=28 Tax=Bordetella RepID=V8VIH9_BORPT
scnpilot_p_inoc_scaffold_407_35
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42525..44441)
DNA (1917bp) protein (639aa)
peptidyl-prolyl cis-trans isomerase D (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148, ECO:0000313|EMBL:CAP42562.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria;
Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ILA9_BORPD rbh
scnpilot_p_inoc_scaffold_407_36
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44586..45725)
DNA (1140bp) protein (380aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00567, ECO:0000256|SAAS:SAAS00012209}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00567, ECO:0000256|SAAS:SAAS00096027};; TaxID=640511 species="Bacteria;
Quinolinate synthase A n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WBS2_BURSC rbh
quinolinate synthetase complex subunit A
scnpilot_p_inoc_scaffold_407_37
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46062..46811)
DNA (750bp) protein (250aa)
Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. YI23 RepID=G8MJB4_9BURK
araC; transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:BAO90654.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bur
scnpilot_p_inoc_scaffold_407_38
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46901..47479
DNA (579bp) protein (193aa)
Putative polyketide cyclase n=1 Tax=Burkholderia sp. YI23 RepID=G8MJB5_9BURK
putative polyketide cyclase
Putative polyketide cyclase {ECO:0000313|EMBL:BAO90653.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia s
scnpilot_p_inoc_scaffold_407_39
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47500..48012
DNA (513bp) protein (171aa)
FMN reductase (NADH) RutF {ECO:0000256|HAMAP-Rule:MF_00833}; EC=1.5.1.42 {ECO:0000256|HAMAP-Rule:MF_00833};; FMN reductase {ECO:0000256|HAMAP-Rule:MF_00833}; NADH-flavin reductase RutF {ECO:0000256|HA
FMN reductase n=1 Tax=Variovorax paradoxus RepID=UPI000372A92F
flavin reductase FMN-binding protein
scnpilot_p_inoc_scaffold_407_40
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48070..48342)
DNA (273bp) protein (91aa)
DNA-binding protein Hu-beta n=49 Tax=Alcaligenaceae RepID=A9IQD6_BORPD
hupB; DNA-binding protein HU-beta
DNA-binding protein HU {ECO:0000313|EMBL:EFF76343.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piecha
scnpilot_p_inoc_scaffold_407_41
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48598..51030)
DNA (2433bp) protein (811aa)
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
Lon protease n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IR47_BORPD rbh
scnpilot_p_inoc_scaffold_407_42
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51518..52780)
DNA (1263bp) protein (421aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XXY4_ALCXX rbh
Clp protease ATP-binding protein
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderial
scnpilot_p_inoc_scaffold_407_43
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52783..53439)
DNA (657bp) protein (219aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000255|HAMAP-Rule:MF_00444}; EC=3.4.21.92 {ECO:0000255|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000255|HAMAP-Rule:MF_00444}; TaxID=340100 spe
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=CLPP_BORPD rbh
scnpilot_p_inoc_scaffold_407_44
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53439..54749)
DNA (1311bp) protein (437aa)
tig; trigger factor (EC:5.2.1.8)
Trigger factor {ECO:0000255|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000255|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000255|HAMAP-Rule:MF_00303};; PPIase {ECO:0000255|HAMAP-Rule:MF_00303}; TaxID=340100 spe
Trigger factor n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=TIG_BORPD rbh
scnpilot_p_inoc_scaffold_407_45
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55248..55955
DNA (708bp) protein (236aa)
Putative transcriptional regulator n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IFG3_BORPD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CAP45032.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella
scnpilot_p_inoc_scaffold_407_46
Halomonas huangheensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55981..56388)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036A0160
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
Uncharacterized protein {ECO:0000313|EMBL:ERL53121.1}; TaxID=1178482 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas huangheen
scnpilot_p_inoc_scaffold_407_47
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56518..57726
DNA (1209bp) protein (403aa)
Succinyldiaminopimelate transaminase {ECO:0000313|EMBL:KCV66295.1}; EC=2.6.1.17 {ECO:0000313|EMBL:KCV66295.1};; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Al
N-succinyl-L,L-diaminopimelate aminotransferase n=5 Tax=Bordetella RepID=K0MJQ3_BORBM rbh
dapC; N-succinyl-L,L-diaminopimelate aminotransferase
scnpilot_p_inoc_scaffold_407_48
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57871..58701
DNA (831bp) protein (277aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAA
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase n=1 Tax=Massilia niastensis RepID=UPI0003680695 rbh
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
scnpilot_p_inoc_scaffold_407_49
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58730..59860
DNA (1131bp) protein (377aa)
dapE2; succinyl-diaminopimelate desuccinylase (EC:3.5.1.18)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rul
Succinyl-diaminopimelate desuccinylase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=DAPE_BORPD rbh
scnpilot_p_inoc_scaffold_407_50
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59857..60741
DNA (885bp) protein (295aa)
prmB; methyltransferase (EC:2.1.1.72)
50S ribosomal protein L3 glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02125}; Short=L3 MTase {ECO:0000256|HAMAP-Rule:MF_02125};; EC=2.1.1.298 {ECO:0000256|HAMAP-Rule:MF_02125};; N5-glutamine
50S ribosomal protein L3 glutamine methyltransferase n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HTU8_ACHXA
scnpilot_p_inoc_scaffold_407_51
unknown

Not on your lists

60738..60902
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_407_52
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60941..62809
DNA (1869bp) protein (623aa)
Probable ABC transporter ATP-binding protein n=2 Tax=Bordetella bronchiseptica RepID=K4T503_BORBO rbh
ABC transporter, ATP-binding protein YheS {ECO:0000313|EMBL:KDD58935.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bor
ABC transporter ATP-binding protein
scnpilot_p_inoc_scaffold_407_53
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62851..64302)
DNA (1452bp) protein (484aa)
Candidate succinate-semialdehyde dehydrogenase (NADP+) n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y110_RAMTT rbh
gabD; succinate-semialdehyde dehydrogenase (NADP+)
Candidate succinate-semialdehyde dehydrogenase (NADP+) {ECO:0000313|EMBL:AEG92228.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;
scnpilot_p_inoc_scaffold_407_54
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64339..65313)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0S9_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH87439.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Stark
scnpilot_p_inoc_scaffold_407_55
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(65359..66879)
DNA (1521bp) protein (507aa)
Putative acyl-CoA synthetase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HD81_ACTM4 rbh
Strain NCTC 7096 contig_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIV57592.1}; TaxID=47500 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneur
putative acyl-CoA synthetase
scnpilot_p_inoc_scaffold_407_56
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66866..67423)
DNA (558bp) protein (186aa)
MaoC-like dehydratase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z5U6_9PROT
MaoC-like dehydratase {ECO:0000313|EMBL:EME69685.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospiri
MaoC domain-containing protein dehydratase
scnpilot_p_inoc_scaffold_407_57
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(67429..67878)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI0003768B2C
MaoC-like dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
scnpilot_p_inoc_scaffold_407_58
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67897..68691)
DNA (795bp) protein (265aa)
Transcriptional regulator, IclR family n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3ACM7_CARHZ
IclR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
IclR family transcriptional regulator
scnpilot_p_inoc_scaffold_407_59
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68904..69299
DNA (396bp) protein (132aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Acidovorax sp. CF316 RepID=J1EB41_9BURK
endoribonuclease L-PSP Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
endoribonuclease L-PSP
scnpilot_p_inoc_scaffold_407_60
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69335..70294
DNA (960bp) protein (320aa)
Uncharacterized protein UPF0065 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GL5_POLSJ rbh
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABE42327.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" so
Displaying items 31-60 of 282 in total

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