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scnpilot_p_inoc_scaffold_569

Search features with annotation key words

Displaying items 31-58 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_569_31
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28213..29001)
DNA (789bp) protein (263aa)
lpxA; UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L148_BORA1 rbh
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMA
scnpilot_p_inoc_scaffold_569_32
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29014..29460)
DNA (447bp) protein (149aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=37 Tax=Bordetella RepID=FABZ_BORBR
scnpilot_p_inoc_scaffold_569_33
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29513..30634)
DNA (1122bp) protein (374aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T6E9_ALCXX rbh
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
scnpilot_p_inoc_scaffold_569_34
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30678..31250)
DNA (573bp) protein (191aa)
OmpH/HlpA family outer membrane protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002F5CB09
OmpH {ECO:0000313|EMBL:KIF83873.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
scnpilot_p_inoc_scaffold_569_35
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31399..33693)
DNA (2295bp) protein (765aa)
Outer membrane protein assembly factor BamA n=2 Tax=Bordetella holmesii RepID=M5NQF9_9BORD rbh
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Bu
yaeT; outer membrane assembly complex, YaeT protein
scnpilot_p_inoc_scaffold_569_36
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33814..35148)
DNA (1335bp) protein (445aa)
ecfE; membrane-associated protease (EC:3.4.24.-)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031, ECO:0000313|EMBL:CAP42870.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Bur
Membrane-associated protease n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INT8_BORPD rbh
scnpilot_p_inoc_scaffold_569_37
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35316..36530)
DNA (1215bp) protein (405aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Achromobacter piechaudii HLE RepID=J4Z0D4_9BURK rbh
scnpilot_p_inoc_scaffold_569_38
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36527..37378)
DNA (852bp) protein (284aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; A
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DE8271
scnpilot_p_inoc_scaffold_569_39
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37383..38162)
DNA (780bp) protein (260aa)
Undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligena
UDP diphosphate synthase n=1 Tax=Cupriavidus sp. WS RepID=UPI0003799CD4 rbh
scnpilot_p_inoc_scaffold_569_40
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38199..38759)
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BHM7_RALP1
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1217052 species="Bacteria;
scnpilot_p_inoc_scaffold_569_41
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38788..39531)
DNA (744bp) protein (248aa)
pyrH; UMP kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
uridylate kinase n=1 Tax=Bordetella sp. FB-8 RepID=UPI000382A881 rbh
scnpilot_p_inoc_scaffold_569_42
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39729..40610)
DNA (882bp) protein (294aa)
Elongation factor Ts n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XUG5_ALCXX rbh
Translation elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteri
scnpilot_p_inoc_scaffold_569_43
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(40797..41546)
DNA (750bp) protein (250aa)
30S ribosomal protein S2 n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INW2_BORPD
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000313|EMBL:CAP42877.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella
scnpilot_p_inoc_scaffold_569_44
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41863..42675
DNA (813bp) protein (271aa)
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
Methionine aminopeptidase n=37 Tax=Bordetella RepID=F4LI10_BORPC rbh
scnpilot_p_inoc_scaffold_569_45
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42689..45289
DNA (2601bp) protein (867aa)
glnD; protein-P-II uridylyltransferase (EC:2.7.7.59)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FE50_9BURK rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII
scnpilot_p_inoc_scaffold_569_46
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45410..47941
DNA (2532bp) protein (844aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkh
Glycogen phosphorylase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2JK29_9BURK rbh
glycogen phosphorylase
scnpilot_p_inoc_scaffold_569_47
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47995..48597
DNA (603bp) protein (201aa)
bphK; glutathione S-transferase (BphK) (EC:2.5.1.18)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030FDF19
Glutathione S-transferase {ECO:0000313|EMBL:KFI08914.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.
scnpilot_p_inoc_scaffold_569_48
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48690..49442)
DNA (753bp) protein (251aa)
5'-methylthioadenosine phosphorylase (EC:2.4.2.28); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] id=12496925 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
5'-methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
5'-methylthioadenosine phosphorylase (EC:2.4.2.28)
scnpilot_p_inoc_scaffold_569_49
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49477..51534)
DNA (2058bp) protein (686aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {EC
DNA ligase n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5UER4_ALCXX rbh
DNA ligase
scnpilot_p_inoc_scaffold_569_50
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51555..52643)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HS33_ACHXA rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP14825.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylos
scnpilot_p_inoc_scaffold_569_51
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52705..56235)
DNA (3531bp) protein (1177aa)
Chromosome partition protein Smc n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=SMC_BORPD rbh
chromosome partition protein
Chromosome partition protein Smc {ECO:0000255|HAMAP-Rule:MF_01894}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetell
scnpilot_p_inoc_scaffold_569_52
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56512..56931
DNA (420bp) protein (140aa)
queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyan
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=QUEF_METFK
scnpilot_p_inoc_scaffold_569_53
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57059..58378
DNA (1320bp) protein (440aa)
Lysophospholipid transporter LplT n=1 Tax=Achromobacter piechaudii HLE RepID=J4J892_9BURK rbh
major facilitator protein
Lysophospholipid transporter LplT {ECO:0000313|EMBL:EJO32024.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromob
scnpilot_p_inoc_scaffold_569_54
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58395..59252)
DNA (858bp) protein (286aa)
Bacteriophage-related DNA polymerase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9II61_BORPD rbh
bacteriophage-related DNA polymerase rbh
Bacteriophage-related DNA polymerase {ECO:0000313|EMBL:CAP42041.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetell
scnpilot_p_inoc_scaffold_569_55
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59242..59775)
DNA (534bp) protein (178aa)
putative ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128)
Conserved hypothetical ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:CAL94329.1}; EC=2.3.1.128 {ECO:0000313|EMBL:CAL94329.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteo
Conserved hypothetical ribosomal-protein-alanine acetyltransferase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K674_AZOSB
scnpilot_p_inoc_scaffold_569_56
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(59772..60542)
DNA (771bp) protein (257aa)
Putative acetyltransferase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9II58_BORPD
acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:CAP42040.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (
scnpilot_p_inoc_scaffold_569_57
unknown

Not on your lists

comp(60597..60980)
DNA (384bp) protein (128aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_569_58
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61153..61842
DNA (690bp) protein (230aa)
chemotaxis protein CheY n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003703B19 rbh
ompR; osmolarity response regulator
Response regulator protein {ECO:0000313|EMBL:CAP42039.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (
Displaying items 31-58 of 58 in total

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