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scnpilot_p_inoc_scaffold_156_71

Organism: SCNpilot_P_inoc_Burkholderiales_62_9

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(80618..81109)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZL5_JANMA similarity UNIREF
DB: UNIREF100
  • Identity: 49.4
  • Coverage: 162.0
  • Bit_score: 166
  • Evalue 2.90e-38
fecI6; ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 49.4
  • Coverage: 162.0
  • Bit_score: 166
  • Evalue 8.10e-39
RNA polymerase sigma factor {ECO:0000313|EMBL:AIJ49460.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testoste similarity UNIPROT
DB: UniProtKB
  • Identity: 52.2
  • Coverage: 157.0
  • Bit_score: 166
  • Evalue 4.00e-38

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Taxonomy

Comamonas testosteroni → Comamonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 492
ATGGATGATCAGAAGGTGGTGCGGGGGATCTACCTCGGGCACCGGCCTTGGCTGTTGGAGCGCTTGCAGCGCCGCCTGCGCAATCACGCCCAAGCTGAAGATCTCACTTCCGAAGCATTCGTGCAGGTTGTCGCTCACCCCGATCCGGGCGCCATCAAGGAGCCGCGTGCGTTTCTAACCACCATTGCCAAGCGCCTGCTGTTCCATTTCTGGCGCCGCCAGGAGCTGGAGCAGGCTTACCTGCAATCCGTGGCTGCGCTTCCCGCCGACACGCTGCCATCCGCGGAAGATGTGGCGCTGATGCTCGAGGCGCTGGCGCGGGTCGATCGCTTGCTCGATGGTATGACGGTGACGGCCAAGGCGGCTTTTCTGCATAGCCAGGTGGATGGCATGACCTATATCGAGATCGCCCGGCGGCTGGAAATATCCCAAATGTCGGTACGCCGCTATGTCGCCGAGGGATTGCGCCGTTGCATGGCAGGTGCCGGTTAG
PROTEIN sequence
Length: 164
MDDQKVVRGIYLGHRPWLLERLQRRLRNHAQAEDLTSEAFVQVVAHPDPGAIKEPRAFLTTIAKRLLFHFWRRQELEQAYLQSVAALPADTLPSAEDVALMLEALARVDRLLDGMTVTAKAAFLHSQVDGMTYIEIARRLEISQMSVRRYVAEGLRRCMAGAG*