ggKbase home page
Advanced Search
Search Help

scnpilot_p_inoc_scaffold_568_9

Organism: SCNpilot_P_inoc_Burkholderiales_62_9

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: 8445..12710

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000313|EMBL: similarity UNIPROT
DB: UniProtKB
  • Identity: 88.7
  • Coverage: 999.99
  • Bit_score: 2478
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=36 Tax=Bordetella RepID=RPOC_BORBR similarity UNIREF
DB: UNIREF100
  • Identity: 88.7
  • Coverage: 999.99
  • Bit_score: 2478
  • Evalue 0.0
  • rbh
rpoC; DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 88.7
  • Coverage: 999.99
  • Bit_score: 2478
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bordetella parapertussis → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4266
ATGAAAGCGCTATTGGATCTGTTCAAGCAGGTTACGCAGGAAGAACAGTTCGACGCCATTCGCATTGGCATCGCGTCGCCGGAGAAGATCCGGTCGTGGTCGTTCGGCGAAGTCAAGAAGCCGGAGACGATCAACTATCGCACGTTCAAGCCCGAACGCGACGGGCTGTTCTGCGCCAAGATCTTCGGGCCGATCAAGGACTACGAGTGCCTGTGCGGCAAGTACAAGCGCCTGAAGCACCGCGGCGTGATCTGCGAGAAGTGCGGCGTGGAAGTCACGCTGGCCAAGGTTCGCCGCGAGCGCATGGGCCATATCGAGCTGGCCAGCCCGGTCGCTCACATCTGGTTCCTGAAGTCGCTGCCGTCGCGCCTGGGCATGGTCCTGGACATGACGCTGCGCGACATCGAGCGCGTGCTGTACTTCGAAGCCTACTGCGTCATCGATCCGGGCATGACGCCGCTCAAGCGCGCCCAGATCATGTCGGAAGACGACTTCCTGGCCAAGACCGAAGAGTACGGCGACGATTTCCGGGCGGTGATGGGTGCCGAGGCCGTGCGCGAACTGCTGCGCACGATCGACATCAACCGCGAGATCGAGACGCTGCGCGCCGACCTCCAGGCCACCAGCTCGGATGCCAAGATCAAGAAGATCTCCAAGCGCCTGAAGGTGTTGGAGGGCTTCCAGAAATCCGGCATCAAGGCCGACTGGATGATCCTGGAAGTGCTGCCCGTGCTGCCGCCCGAGCTGCGCCCGCTGGTGCCGCTGGATGGCGGCCGCTTCGCCACGTCCGACCTGAACGACTTGTATCGCCGGGTCATCAACCGCAACAACCGCCTGAAGCGCCTGCTCGAACTGAAGGCTCCTGAAATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCCGTCGACTCGCTGCTGGACAACGGCCGCCGCGGCAAGGCCATGACCGGCGCCAACAAGCGTCCGCTCAAGTCGCTGGCCGACATGATCAAGGGCAAGAGCGGCCGCTTCCGCCAGAACCTGCTGGGCAAGCGCGTCGACTACTCGGGCCGGTCGGTGATCGTGGTGGGTCCGCAGCTCAAGCTGCACCAGTGCGGCCTGCCCAAGCTGATGGCGCTGGAACTGTTCAAGCCCTTCATCTTCAACCGCCTGGAAATGATGGGTCTGGCCACGACCATCAAGGCGGCCAAGAAGCTGGTGGAAACGCAGGAACCGGTGGTGTGGGACATCCTCGAAGAGGTGATCCGCGAACACCCGATCATGCTGAACCGCGCGCCGACGCTGCACCGCCTGGGCATCCAGGCGTTCGAGCCGGTGCTGATCGAAGGCAAGGCCATCCAGCTGCACCCGCTGGTTTGCGCGGCGTTCAACGCCGACTTCGACGGCGACCAGATGGCCGTCCACGTCCCGCTGTCGCTGGAAGCCCAGCTGGAAGCCCGCACGCTGATGCTGGCCTCCAACAACGTGCTGTTCCCGGCCAACGGCGAACCCTCGATCGTTCCTTCGCAGGACATCGTGCTGGGCCTGTACTACGCCACCCGCGAGCGCGTGAATGGTGCCGGCGAAGGCCTGCACTTCGTGGACGTGTCCGAAGTCATGCGCGCCTACGAGAACAAGGCGGTCGAGCTGCAGTCGCGCATCACCGTGCGCCTGAACGAGTACGAACGTGACGAGAACGGCGAGTACCAGCCGGTGCTGCGCCGCTTCGAGACCACCGTCGGCCGCGCCATCCTGTCGGAGATCCTGCCCAAGGGGCTGCCCTTCTCGGTGCTGAACAAGCCCCTGAAGAAGAAGGAGATCTCGCGCCTGATCAACCAGTCGTTCCGCCGCTGCGGCCTGCGCGACACGGTGATCTTCGCCGACCAGCTGATGCAGTCGGGCTTCCGCCTGGCCACGCGCGGCGGTATCTCGATCTGCATGGACGATATGCTGATCCCGTCCGCCAAGGAAGGCATCCTTGCCGAGGCGAGCAAAGAGGTCAAGGAAATCGACAAGCAGTACTCGTCGGGTCTGGTGACGTCCCAGGAACGCTACAACAACGTGGTGGACATCTGGGGCAAGGCCGGCGACCGCGTGGGCAAGGCGATGATGGAACAGCTCTCGACCGAGCCTGTCGTCGACCGCCACGGCACCGCCACCCGCCAGGAGTCGTTCAACTCGATCTACATGATGGCCGACTCCGGCGCCCGCGGTTCCGCGGCCCAGATCCGCCAGCTGGCCGGCATGCGGGGCCTGATGGCCAAGCCTGACGGCTCCATCATCGAGACGCCCATCACCGCGAACTTCCGCGAGGGCCTGAACGTACTGCAGTACTTCATCTCGACCCACGGCGCGCGTAAAGGCCTGGCCGATACGGCGCTGAAGACGGCGAACTCGGGTTACCTGACCCGCCGTCTGGTGGACGTGACGCAGGATCTGGTCATCACCGAGGACGATTGCGGCACGACCTTCGGTTTCGCCATGAAGGCGCTGGTCGAAGGCGGTGAAGTCATCGAGCCGCTGCGCGACCGTATCCTCGGCCGCACCGTGGTGTCCGACGTGGTCAACCCCGATACTCAGGAAACCGTGTTCGAAGCCGGCACGCTGCTGGACGAAGACGCGGTCGACACCATCGAGCGCCTGGGCATCGACGAAGTGAAGGTGCGTTCGGCCCTGACCTGCGAAACCCGCCATGGCCTGTGCGCCGCGTGCTACGGCCGCGACCTGGGTCGCGGTTCGCCGGTCAACGTCGGCGAGGCGGTCGGCGTGATCGCCGCCCAGTCCATCGGCGAACCCGGCACGCAGCTGACGATGCGTACGTTCCACATCGGTGGCGCGGCCTCGCGCGCGGCGCTGGCCTCGGGCGTGGAAACCAAGTCCAATGGCACGGTGCGCTTCACCAGCGCCATGCGCTATGTGACCAACGGCAAGGGCGAGCAGGTCGCCATCTCGCGTTCGGGCGAAATCCTGATCGTCGACGACAATGGCCGCGAGCGCGAGCGCCACAAGGTGCCGTACGGCGCGGTCCTGCTGCATGGCGACGGCGCGACGGTCAAGGCCGGTGCGCAGTTGGCCAGCTGGGATCCGCTGACCCGTCCGATCATCACCGAGTACGGTGGCACGATCAAGTTCGAGAACGTGGAAGAAGGCGTCACGGTGGCTCGTCAGCTCGACGAAGTCACCGGTCTGTCGACCCTGGTCGCGATCACGCCCAAGACGCGTGGCAGCGCCAAGCAGACCGTGCGTCCGCAGGTCAAGCTGCTCGACGGCGCCAACGAGGAAGTCAAGATCGCCGGTACCGATCACTCGGTCAGCATCTCCTTCCCGGTGGGCGCGCTGATCACCGTTCGCGACGGCCAGCAGGTCGGCGTGGGCGAGGTGCTGGCGCGTATTCCGCAGGAATCGCAGAAGACCCGCGACATTACCGGGGGTCTGCCGCGTGTGGCCGAGCTGTTCGAAGCCCGTTCGCCCAAGGATGCCGGCATGCTCGCCGACGTCACCGGCACGGTCTCGTTCGGCAAGGACACCAAGGGCAAGCAGCGCCTGGTCATCACCGACCTGGACGGCGTCAGCCACGAGTTCCTGATTCCGAAGGAAAAGCAGGTGCTGGTGCACGACGGCCAGGTGGTGAACAAGGGCGAAATGATCGTGGACGGCCCGGCCGATCCCCACGACATCCTGCGCCTGCAGGGCATCGAGAAGCTGGCGATCTACATCGTCGACGAAGTGCAGGACGTCTACCGCCTGCAAGGCGTGAAGATCAACGACAAGCACATCGAAGTGATCGTGCGCCAGATGCTGCGCCGCGTGAACATCGTCGATCCGGGCGACACCTCGTTCATCCCGGGTGAACAGGTCGAACGCGCCGAGATGCTGAACGAGAACGATCGCGTCAACGCCGACAACCAGCGTCCCGCCTCGTACGAGAACGTGCTGCTGGGTATCACGAAGGCCTCGCTGTCGACCGATTCGTTCATCTCGGCCGCTTCGTTCCAGGAAACCACGCGTGTCCTGACCGAAGCCGCCATCATGGGCAAGCGCGACGACCTGCGCGGCTTGAAGGAAAACGTCATCGTGGGCCGCCTGATCCCCGCGGGTACCGGCATGGCCTACCATGTCGCCCGCAAGGAGAAGGAAGCCCAGGAGGCCGCCGAGCGCGAAGTGGTATTCGCCGACGTGGGCAACACCTTCGACGAGAGCGAGATCTTCAATACGCCGGCCGAAAGCGTGACGGCCTCGGAGCCTTCGGGCGACGAGCCGGCCGAAGGCGGCAGCCAGGAGTAA
PROTEIN sequence
Length: 1422
MKALLDLFKQVTQEEQFDAIRIGIASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAYCVIDPGMTPLKRAQIMSEDDFLAKTEEYGDDFRAVMGAEAVRELLRTIDINREIETLRADLQATSSDAKIKKISKRLKVLEGFQKSGIKADWMILEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVETQEPVVWDILEEVIREHPIMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRERVNGAGEGLHFVDVSEVMRAYENKAVELQSRITVRLNEYERDENGEYQPVLRRFETTVGRAILSEILPKGLPFSVLNKPLKKKEISRLINQSFRRCGLRDTVIFADQLMQSGFRLATRGGISICMDDMLIPSAKEGILAEASKEVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDRVGKAMMEQLSTEPVVDRHGTATRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTTFGFAMKALVEGGEVIEPLRDRILGRTVVSDVVNPDTQETVFEAGTLLDEDAVDTIERLGIDEVKVRSALTCETRHGLCAACYGRDLGRGSPVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAALASGVETKSNGTVRFTSAMRYVTNGKGEQVAISRSGEILIVDDNGRERERHKVPYGAVLLHGDGATVKAGAQLASWDPLTRPIITEYGGTIKFENVEEGVTVARQLDEVTGLSTLVAITPKTRGSAKQTVRPQVKLLDGANEEVKIAGTDHSVSISFPVGALITVRDGQQVGVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEKLAIYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTSFIPGEQVERAEMLNENDRVNADNQRPASYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMAYHVARKEKEAQEAAEREVVFADVGNTFDESEIFNTPAESVTASEPSGDEPAEGGSQE*