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scnpilot_p_inoc_scaffold_568

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_568_1
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..141
DNA (141bp) protein (47aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Translation elongation factor Tu n=1 Tax=Bordetella pertussis STO1-CHOC-0019 RepID=V9BFK0_BORPT
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=257310 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenac
scnpilot_p_inoc_scaffold_568_2
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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528..908
DNA (381bp) protein (127aa)
Protein translocase subunit SecE n=3 Tax=Bordetella holmesii RepID=M5NLS8_9BORD
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetel
secE; preprotein translocase subunit SecE
scnpilot_p_inoc_scaffold_568_3
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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927..1460
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L2P3_BORA1
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholder
nusG; transcription antitermination protein NusG
scnpilot_p_inoc_scaffold_568_4
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1595..2026
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Bordetella avium (strain 197N) RepID=RL11_BORA1
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium
scnpilot_p_inoc_scaffold_568_5
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2029..2733
DNA (705bp) protein (235aa)
50S ribosomal protein L1 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXM0_PUSST
50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas s
scnpilot_p_inoc_scaffold_568_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3026..3547
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXL9_PUSST
LSU ribosomal protein L10p
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
scnpilot_p_inoc_scaffold_568_7
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3635..4015
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X5C0_9BURK
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobac
LSU ribosomal protein L7/L12 (P1/P2
scnpilot_p_inoc_scaffold_568_8
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4321..8433
DNA (4113bp) protein (1371aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=3 Tax=Bordetella petrii RepID=RPOB_BORPD rbh
scnpilot_p_inoc_scaffold_568_9
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8445..12710
DNA (4266bp) protein (1422aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000313|EMBL:
DNA-directed RNA polymerase subunit beta' n=36 Tax=Bordetella RepID=RPOC_BORBR rbh
rpoC; DNA-directed RNA polymerase subunit beta'
scnpilot_p_inoc_scaffold_568_10
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12783..13991)
DNA (1209bp) protein (403aa)
Transcriptional regulator n=1 Tax=Herbaspirillum sp. CF444 RepID=J2LKE3_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL92680.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" so
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_568_11
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

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14113..15087
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Brevibacillus panacihumi W25 RepID=V6M5Q5_9BACL
ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
hypothetical protein
scnpilot_p_inoc_scaffold_568_12
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15084..15884
DNA (801bp) protein (267aa)
sulfonate/nitrate/taurine transport system ATP-binding protein (EC:3.6.3.25); K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI00036B7EF3 rbh
ABC transporter
scnpilot_p_inoc_scaffold_568_13
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

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15881..16684
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Brevibacillus panacihumi W25 RepID=V6M7R6_9BACL
tauC; putative taurine transport system permease protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
alkanesulfonate transporter permease
scnpilot_p_inoc_scaffold_568_14
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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16677..17477
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI00038286F5
ABC transporter; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
ABC transporter permease
scnpilot_p_inoc_scaffold_568_15
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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17488..18213
DNA (726bp) protein (242aa)
class II aldolase/adducin domain protein; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17] Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein n=1 Tax=Streptomyces sp. CNQ766 RepID=UPI00035CEC9E
putative class II aldolase
scnpilot_p_inoc_scaffold_568_16
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18227..18955
DNA (729bp) protein (243aa)
N-carbamoylsarcosine amidase (EC:3.5.1.59) Tax=RBG_16_Betaproteobacteria_64_18_curated
N-carbamoylsarcosine amidase (EC:3.5.1.59)
N-carbamoylsarcosine amidase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AJH6_RHIFH
scnpilot_p_inoc_scaffold_568_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18952..19725)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036A773B
Uncharacterized protein {ECO:0000313|EMBL:ERF81027.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
transcriptional regulator, GntR-family
scnpilot_p_inoc_scaffold_568_18
Oidiodendron maius, Oidiodendron, Leotiomycetes, Ascomycota, Fungi

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19951..21498
DNA (1548bp) protein (516aa)
Carotenoid cleavage dioxygenase n=4 Tax=Amycolatopsis mediterranei RepID=I7CTV0_AMYMS rbh
carotenoid cleavage dioxygenase
Uncharacterized protein {ECO:0000313|EMBL:KIM93754.1}; TaxID=913774 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Myxotrichaceae; mitospo
scnpilot_p_inoc_scaffold_568_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21533..22510
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D022_VARPS rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS22366.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
scnpilot_p_inoc_scaffold_568_20
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22532..23461)
DNA (930bp) protein (310aa)
LysR family transcriptional regulator n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UCT3_ADVKW rbh
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AFK62821.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmiren
scnpilot_p_inoc_scaffold_568_21
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23654..24544
DNA (891bp) protein (297aa)
Molybdopterin dehydrogenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QVW1_9BURK rbh
Molybdopterin dehydrogenase {ECO:0000313|EMBL:ETF03792.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003
carbon monoxide dehydrogenase medium chain (COdehydrogenase subunit M) (CO-DH M)
scnpilot_p_inoc_scaffold_568_22
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24548..25039
DNA (492bp) protein (164aa)
(2Fe-2S)-binding protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QWQ9_9BURK
(2Fe-2S)-binding protein {ECO:0000313|EMBL:ETF03793.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
carbon monoxide dehydrogenase
scnpilot_p_inoc_scaffold_568_23
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25032..27440
DNA (2409bp) protein (803aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QYC3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:ETF04627.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
scnpilot_p_inoc_scaffold_568_24
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27473..28207
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QZ06_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:ETF04628.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
putative enoyl-CoA hydratase/isomerase
scnpilot_p_inoc_scaffold_568_25
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28221..28889
DNA (669bp) protein (223aa)
Carbon monoxide dehydrogenase subunit G n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UCT9_ADVKW
carbon monoxide dehydrogenase subunit G
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:AFK62827.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmir
scnpilot_p_inoc_scaffold_568_26
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28917..29903
DNA (987bp) protein (329aa)
MFS transporter n=1 Tax=Advenella kashmirensis W13003 RepID=V8QV26_9BURK rbh
MFS transporter {ECO:0000313|EMBL:ETF03796.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
extra-cytoplasmic solute receptor family protein 71
scnpilot_p_inoc_scaffold_568_27
unknown

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comp(29947..31701)
DNA (1755bp) protein (585aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_568_28
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(31797..32777)
DNA (981bp) protein (327aa)
Uncharacterized protein UPF0065 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNF3_VEREI rbh
hypothetical protein rbh
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABM59160.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter
scnpilot_p_inoc_scaffold_568_29
Bordetella sp. 10d, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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33002..33535
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036E1C97
4-amino-3-hydroxybenzoate 2,3-dioxygenase {ECO:0000313|EMBL:BAD08206.1}; TaxID=170622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bord
3-hydroxybutyryl-CoA dehydratase
scnpilot_p_inoc_scaffold_568_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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33548..34213
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D8E209
isochorismatase hydrolase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
isochorismatase
Displaying items 1-30 of 58 in total

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