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scnpilot_p_inoc_scaffold_851_36

Organism: SCNpilot_P_inoc_Burkholderiales_62_9

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(33742..36105)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=18 Tax=Bordetella pertussis RepID=F4LDX9_BORPC similarity UNIREF
DB: UNIREF100
  • Identity: 80.1
  • Coverage: 770.0
  • Bit_score: 1176
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=257313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alc similarity UNIPROT
DB: UniProtKB
  • Identity: 80.1
  • Coverage: 770.0
  • Bit_score: 1176
  • Evalue 0.0
rpoD; RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 80.1
  • Coverage: 770.0
  • Bit_score: 1176
  • Evalue 0.0
  • rbh

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Taxonomy

Bordetella pertussis → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2364
ATGGCGAAAACGACAGGCAAGACGCTGACTGTGAACAAATCCAAAGCCGAAGGGCAAGACCAGGCCAAGGAGAAGGCTGCGTCCAAGACGGCGGCCGCCAGCGGCGTCAGGGTGACGGTCAAGTCGGCTGGCAGGGCCCGCACCAAGCTGTTGGACCCGCAAGCCGCCGCCCAGGCGGCTGATGCTGATTTCGACGCCGTGACGGCCGAGCCCGCCGAGAAGGCCAAGCCCGCCGCCAAGGCGGCCAAGAAGGCCGGCAAGACGGCGGCCAAGACCGCGACCGCCGCCGACAAGAAGAACGCCGAGAAGAAGCTGGCCGAACTGCTGGCCAAGCCGACGGGCCGTCGGCCGGGCCGTCCGCCCAAGGACGCCAAGCCGGCCGAGTCTTCCGGTGGGGATTTCGATGACGGGGGCGATAACGACGGTGATGCCGAGCCTATCCCCGAGATCAAGATCCCCAAGGGCCGGGGCAAGCGCAGCAAGGCCGATCCCAAGGACCTGATCGCCCGCGGACCGGTAACGCCCGAGGAATACGAGGCGCGCCGCAACCGCCTGAAGCTGCTGATCAAGCTCGGCAAGGACCGTGGCTACCTGACCTATGGCGAGATCAACGACCATCTGCCCGACGACCTGGTCGACGCCGAAGCCATCGACGGCATCATCAGCACCTTCAACGACATGGGCATCTCGGTCTACGACCAGGCGCCCGATGCCGAGACGCTGCTGCTGAACGAGAACGCCCCGGTCGCCTCGTCCGACGACGACGCCGAGGAAGAAGCGGAAGCCGCGCTGTCCACGGTCGATTCCGACTTCGGTCGCACCACCGATCCCGTGCGCATGTACATGCGCGAGATGGGGTCGGTCGAGCTCTTGACCCGCGAAGGGGAAATCGAGATCGCCAAGCGCATCGAGGACGGCCTCAAGCACATGGTGATGGCGATCTCCGCCTGCCCGACCACGATCAACGAGATCCTGGAGAGCGCCGACCGCGTCCGCGCGTCCGAGATCCAGATCGACGAGATCGTCGACGGCCTGATCGACCCCAATGACGGCGAGGAATATGCCGGTTCGGGCGTCACCTCGTCGTCCGACGATGACGACGAAGAGGGCGAGGACGCTCCCGCCGGCGGCATGAGCAGCAAGCAGGTCGAAGAGCTGCGCGTGAAGTCGCTGGAGAAGTTCGACAGCGTCAAGCGCTGGTTCGACAGGATGCGCCAGGCCTACGAGCGCGAAGGCTACAAGTCGGAAGCCTACATCACCGCCCAGGAAACCATCCTGGAAGAGATGATGGGCATCCGCTTCACCGCGAAGATGGTCGAGCGCCTGGCCGACACGCTGCGTGCGCAGGTCGAGGAAGTCCGCAAGCTCGAGCGCGCGATCATGCAGATCTGTGTGGACCGTGCCGGCATGCCGCGCACGCACTTCATCAAGGCCTTCCCGGGGCATGAGACCAACCTGGAATGGGTGCTTGGGGAGGTCAACGCCGCCCACGGTTATTCCGAGACGCTGTCGCGCCAGATCCCGGCCATCCAGGAACTGCAGCAGAAGCTGATCGACCTGCAGGCCCGCGTGGTGCTGCCGCTGAAGGACCTGAAGGACGTCAACAAGCAGATGGCGACCGGCGAGGCCAAGGCCCGCAAGGCCAAGCGCGAGATGACCGAGGCCAACCTGCGCCTGGTGATCTCGATCGCCAAGAAGTACACGAACCGCGGCCTGCAGTTCCTGGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAATACCGTCGCGGCTACAAGTTCTCGACCTACGCCACGTGGTGGATCCGGCAGGCCATCACCCGTTCGATCGCCGATCAGGCGCGCACCATCCGTATCCCGGTGCACATGATCGAGACGATCAACAAGATGAACCGGATCAGCCGGCAGATCCTGCAGGAAACCGGCGCCGAGCCGGATCCCGCCACGCTGGCGCAGAAGATGGACATGCCGGAGGACAAGATCCGCAAGATCCTGAAGATCGCCAAGGAACCGATCTCGATGGAGACCCCCATCGGCGACGACGACGATTCGCACCTGGGCGACTTCATCGAGGACACCGCTACGCTGGCGCCCTCGGATGCCGCGCTGCACGGTTCGATGCGCAACGTCGTCAAGGAAGTGCTGGATTCGCTGACGCCGCGCGAGGCCAAGGTGCTGCGCATGCGTTTCGGTATCGAGATGAGCACCGACCAGACGCTGGAAGAGGTGGGCAAGCAGTTCGACGTGACGCGCGAGCGCATCCGCCAGATAGAAGCCAAGGCGCTGCGCAAGCTGCGCCATCCGAGCCGGGCGGACAAGCTCAAGAGCTTCCTGGAAGGGCAGTAA
PROTEIN sequence
Length: 788
MAKTTGKTLTVNKSKAEGQDQAKEKAASKTAAASGVRVTVKSAGRARTKLLDPQAAAQAADADFDAVTAEPAEKAKPAAKAAKKAGKTAAKTATAADKKNAEKKLAELLAKPTGRRPGRPPKDAKPAESSGGDFDDGGDNDGDAEPIPEIKIPKGRGKRSKADPKDLIARGPVTPEEYEARRNRLKLLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFNDMGISVYDQAPDAETLLLNENAPVASSDDDAEEEAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILESADRVRASEIQIDEIVDGLIDPNDGEEYAGSGVTSSSDDDDEEGEDAPAGGMSSKQVEELRVKSLEKFDSVKRWFDRMRQAYEREGYKSEAYITAQETILEEMMGIRFTAKMVERLADTLRAQVEEVRKLERAIMQICVDRAGMPRTHFIKAFPGHETNLEWVLGEVNAAHGYSETLSRQIPAIQELQQKLIDLQARVVLPLKDLKDVNKQMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRNVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ*