ggKbase home page

scnpilot_p_inoc_scaffold_1041

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1041_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..606)
-----------------
DNA (606bp)
protein (202aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC23_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97014.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
hypothetical protein
scnpilot_p_inoc_scaffold_1041_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

843..2081
-----------------
DNA (1239bp)
protein (413aa)
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=2 Tax=Alicycliphilus denitrificans RepID=E8TS36_ALIDB
ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:ADU97874.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alic
scnpilot_p_inoc_scaffold_1041_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2146..3759
-----------------
DNA (1614bp)
protein (538aa)
N-6 DNA methylase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HLG0_9BURK rbh
N-6 DNA methylase
N-6 DNA methylase {ECO:0000313|EMBL:AFU43808.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_1041_4
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3756..4931
-----------------
DNA (1176bp)
protein (392aa)
Putative Type I restriction-modification system (Specificity subunit) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CND5_THIA3 rbh
putative Type I restriction-modification system (Specificity subunit)
Putative Type I restriction-modification system (Specificity subunit) {ECO:0000313|EMBL:CAZ90063.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" s
scnpilot_p_inoc_scaffold_1041_5
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4952..6598
-----------------
DNA (1647bp)
protein (549aa)
transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377C2A rbh
transcriptional regulator Tax=GWA2_Burkholderiales_64_37_curated
transcriptional regulator
scnpilot_p_inoc_scaffold_1041_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6739..10224
-----------------
DNA (3486bp)
protein (1162aa)
Type III restriction protein res subunit n=1 Tax=Acidovorax sp. KKS102 RepID=K0HT23_9BURK rbh
type III restriction protein res subunit
Type III restriction protein res subunit {ECO:0000313|EMBL:AFU43802.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acido
scnpilot_p_inoc_scaffold_1041_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10256..13198)
-----------------
DNA (2943bp)
protein (981aa)
UvrABC system protein A n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAY8_ALIDK
UvrABC system protein A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_0
scnpilot_p_inoc_scaffold_1041_8
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13231..14355)
-----------------
DNA (1125bp)
protein (375aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AIK6_NITEC rbh
magnesium and cobalt transport protein CorA
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitro
scnpilot_p_inoc_scaffold_1041_9
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14379..14954)
-----------------
DNA (576bp)
protein (192aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ER29_9RHIZ
SNARE associated golgi family protein {ECO:0000313|EMBL:CDX29246.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mes
putative membrane-associated protein
scnpilot_p_inoc_scaffold_1041_10
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15052..15162
-----------------
DNA (111bp)
protein (37aa)
Restriction endonuclease BglII n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUT4_ACCPU
Restriction endonuclease BglII
Tax=BJP_IG2158_Methylococcales_50_91
scnpilot_p_inoc_scaffold_1041_11
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15522..16196
-----------------
DNA (675bp)
protein (225aa)
MT-A70 family protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUT3_ACCPU rbh
MT-A70 family protein
MT-A70 family protein {ECO:0000313|EMBL:ACV36328.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_p_inoc_scaffold_1041_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16386..17567
-----------------
DNA (1182bp)
protein (394aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD44_ACISJ
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABM44169.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
scnpilot_p_inoc_scaffold_1041_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17701..18240
-----------------
DNA (540bp)
protein (180aa)
Single-stranded DNA-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXV4_ALIDB
single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1603291 species="Bacteria; Proteobacteria; Bet
scnpilot_p_inoc_scaffold_1041_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18257..18595)
-----------------
DNA (339bp)
protein (113aa)
ribosomal subunit Interface protein id=12551758 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ribosomal subunit Interface protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
ribosomal subunit Interface protein
scnpilot_p_inoc_scaffold_1041_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18735..19604
-----------------
DNA (870bp)
protein (290aa)
peptidase C26 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003768978 rbh
Predicted glutamine amidotransferases {ECO:0000313|EMBL:GAD23314.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
peptidase C26
scnpilot_p_inoc_scaffold_1041_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19671..20225)
-----------------
DNA (555bp)
protein (185aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXU5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86919.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
scnpilot_p_inoc_scaffold_1041_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20222..20908)
-----------------
DNA (687bp)
protein (229aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXU4_ALIDB rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01977.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
scnpilot_p_inoc_scaffold_1041_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21068..22267)
-----------------
DNA (1200bp)
protein (400aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1603291 species="Bacteria;
Phosphoglycerate kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAX9_ALIDK rbh
scnpilot_p_inoc_scaffold_1041_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22313..22648)
-----------------
DNA (336bp)
protein (112aa)
branched-chain amino acid transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003825A12
branched-chain amino acid transport
Predicted membrane protein {ECO:0000313|EMBL:GAD22898.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-
scnpilot_p_inoc_scaffold_1041_20
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22645..23403)
-----------------
DNA (759bp)
protein (253aa)
AzlC family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD33_ACISJ
AzlC family protein
AzlC family protein {ECO:0000313|EMBL:ABM44158.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS4
scnpilot_p_inoc_scaffold_1041_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23400..24374)
-----------------
DNA (975bp)
protein (325aa)
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Methionyl-tRNA formyltransferase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=FMT_ACIET
methionyl-tRNA formyltransferase
scnpilot_p_inoc_scaffold_1041_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24393..24884)
-----------------
DNA (492bp)
protein (164aa)
Putative lipoprotein transmembrane n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAX5_ALIDK
hypothetical protein
Lipoprotein transmembrane {ECO:0000313|EMBL:GAO25578.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus
scnpilot_p_inoc_scaffold_1041_23
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24881..25405)
-----------------
DNA (525bp)
protein (175aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TA91_ACIDE
peptide deformylase
scnpilot_p_inoc_scaffold_1041_24
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25573..26796
-----------------
DNA (1224bp)
protein (408aa)
peptidoglycan-binding protein n=1 Tax=Acidovorax avenae RepID=UPI0002F25175
peptidoglycan-binding lysin domain-containing protein
Peptidoglycan-binding lysin domain protein {ECO:0000313|EMBL:ADX48506.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidov
scnpilot_p_inoc_scaffold_1041_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26817..27959
-----------------
DNA (1143bp)
protein (381aa)
DNA protecting protein DprA n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXT6_ALIDB
DNA protecting protein dpra
DNA protecting protein DprA {ECO:0000313|EMBL:ADV01969.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus
scnpilot_p_inoc_scaffold_1041_26
unknown

Not on your lists

28050..28196
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1041_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28483..29802
-----------------
DNA (1320bp)
protein (440aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
phosphoenolpyruvate carboxykinase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036B62BB
Displaying 27 items

View Taxonomy