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scnpilot_p_inoc_scaffold_1427

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1427_1
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1732)
DNA (1731bp) protein (577aa)
feruloyl-CoA synthase n=1 Tax=Variovorax paradoxus RepID=UPI000361C219
long-chain-fatty-acid--CoA ligase
Long-chain-fatty-acid--CoA ligase-like protein {ECO:0000313|EMBL:AEG93599.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source
scnpilot_p_inoc_scaffold_1427_2

Not on your lists

comp(1776..2579)
DNA (804bp) protein (268aa)
Putative enoyl-CoA hydratase/isomerase n=1 Tax=uncultured bacterium RepID=B3F475_9BACT
Putative enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABW35795.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
unsaturated acyl-CoA hydratase
scnpilot_p_inoc_scaffold_1427_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2710..3450)
DNA (741bp) protein (247aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {E
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I4T1_9BURK
scnpilot_p_inoc_scaffold_1427_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3471..4301)
DNA (831bp) protein (277aa)
AMP-dependent synthetase and ligase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW82_ALIDB
AMP-dependent synthetase/ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADV01856.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyc
scnpilot_p_inoc_scaffold_1427_5
unknown

Not on your lists

comp(4295..5344)
DNA (1050bp) protein (350aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1427_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5298..6713)
DNA (1416bp) protein (472aa)
nad(p)(+) transhydrogenase (ab-specific) (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}
NAD(P) transhydrogenase subunit beta n=2 Tax=Alicycliphilus denitrificans RepID=E8TW83_ALIDB
scnpilot_p_inoc_scaffold_1427_7
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6744..8318)
DNA (1575bp) protein (525aa)
pntA; NAD(P) transhydrogenase subunit alpha (EC:1.6.1.2) Tax=GWA2_Burkholderiales_64_37_curated
NAD(P) transhydrogenase subunit alpha n=1 Tax=Acidovorax radicis RepID=UPI00023751E5
NAD(P) transhydrogenase subunit alpha
scnpilot_p_inoc_scaffold_1427_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8468..9337
DNA (870bp) protein (290aa)
Glutamine amidotransferase class-II n=2 Tax=Alicycliphilus denitrificans RepID=E8TVF6_ALIDB
glutamine amidotransferase
Glutamine amidotransferase class-II {ECO:0000313|EMBL:AEB86754.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyc
scnpilot_p_inoc_scaffold_1427_9
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9412..9705
DNA (294bp) protein (98aa)
toxin n=1 Tax=Methyloversatilis universalis RepID=UPI00036AB9EB
hypothetical protein Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1427_10
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9692..10027
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JNQ6_9GAMM
hypothetical protein
hypothetical protein Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
scnpilot_p_inoc_scaffold_1427_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10065..11078)
DNA (1014bp) protein (338aa)
Integron integrase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJI9_THIDA rbh
integron integrase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
integron integrase
scnpilot_p_inoc_scaffold_1427_12

Not on your lists

comp(11511..11783)
DNA (273bp) protein (91aa)
Uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=U8BXI8_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDL74570.1}; TaxID=1449437 species="Viruses; dsDNA viruses, no RNA stage; unclassified dsDNA phages.;" source="Pseudomonas phage vB_PaeP_Tr60_Ab31.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1427_13
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14146..15180
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Klebsiella oxytoca 10-5250 RepID=H3N6E3_KLEOX rbh
Uncharacterized protein {ECO:0000313|EMBL:EHT08611.1}; TaxID=883125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxyt
hypothetical protein
scnpilot_p_inoc_scaffold_1427_14
Shewanella putrefaciens, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15769..16074
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) RepID=A4Y4V7_SHEPC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP74990.1}; TaxID=319224 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella putrefacie
scnpilot_p_inoc_scaffold_1427_15
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16195..16473
DNA (279bp) protein (93aa)
Plasmid maintenance system killer protein n=1 Tax=Pseudomonas stutzeri TS44 RepID=I4JIM2_PSEST
plasmid maintenance system killer protein; K07334 proteic killer suppression protein Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
addiction module killer protein
scnpilot_p_inoc_scaffold_1427_16
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16473..16766
DNA (294bp) protein (98aa)
XRE family transcriptional regulator n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003622A4A
Cro/Ci family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
plasmid maintenance system antidote protein
scnpilot_p_inoc_scaffold_1427_17
unknown

Not on your lists

comp(17300..17506)
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1427_18
Rhodobacteraceae bacterium HTCC2083, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18044..18370
DNA (327bp) protein (109aa)
NIPSNAP superfamily n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6ATW1_9RHOB
NIPSNAP superfamily {ECO:0000313|EMBL:EDZ41735.1}; TaxID=314270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HTCC2083
NIPSNAP family containing protein
scnpilot_p_inoc_scaffold_1427_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18538..19125
DNA (588bp) protein (196aa)
Twin-arginine translocation pathway signal n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK62_9BURK
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EIK89602.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source=
twin-arginine translocation pathway signal
scnpilot_p_inoc_scaffold_1427_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19174..21027
DNA (1854bp) protein (618aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK61_9BURK
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EIK89601.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydro
formate dehydrogenase subunit alpha
scnpilot_p_inoc_scaffold_1427_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21018..21506
DNA (489bp) protein (163aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK61_9BURK
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EIK89601.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydro
formate dehydrogenase
scnpilot_p_inoc_scaffold_1427_22
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21509..22390
DNA (882bp) protein (294aa)
Formate dehydrogenase, iron-sulfur subunit {ECO:0000313|EMBL:EIK89600.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EIK89600.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
Formate dehydrogenase, iron-sulfur subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK60_9BURK rbh
formate dehydrogenase subunit beta
scnpilot_p_inoc_scaffold_1427_23
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22387..23016
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036A0FC0
formate dehydrogenase subunit gamma
Uncharacterized protein {ECO:0000313|EMBL:AFN76312.1}; TaxID=1123519 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutz
scnpilot_p_inoc_scaffold_1427_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23111..24106
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003817BE8
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;
fdhE; formate dehydrogenase accessory protein FdhE
scnpilot_p_inoc_scaffold_1427_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24106..25587
DNA (1482bp) protein (494aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine sy
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
selenocysteine synthase n=1 Tax=Variovorax paradoxus RepID=UPI0003691E2E rbh
scnpilot_p_inoc_scaffold_1427_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25584..27512
DNA (1929bp) protein (643aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000363BE41 rbh
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EIK89595.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga
Selenocysteine-specific translation elongation factor
scnpilot_p_inoc_scaffold_1427_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27553..28023)
DNA (471bp) protein (157aa)
Alkylhydroperoxidase AhpD family core domain protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYU0_9GAMM
alkylhydroperoxidase AhpD family core domain protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
alkylhydroperoxidase AhpD family core domain protein
scnpilot_p_inoc_scaffold_1427_28
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28157..29143)
DNA (987bp) protein (329aa)
Transcriptional regulator, AraC family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJA6_VEREI rbh
helix-turn-helix domain-containing protein
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABM57713.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="
scnpilot_p_inoc_scaffold_1427_29
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29393..30169
DNA (777bp) protein (259aa)
Cyclase family protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJA9_VEREI rbh
cyclase family protein
Cyclase family protein {ECO:0000313|EMBL:ABM57716.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacte
scnpilot_p_inoc_scaffold_1427_30
Serratia sp. Ag1, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30181..30594
DNA (414bp) protein (138aa)
PREDICTED: ribonuclease UK114-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1964C
Endoribonuclease L-PSP {ECO:0000313|EMBL:KFK95958.1}; TaxID=1524467 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. Ag1.
translational inhibitor protein
Displaying items 1-30 of 32 in total

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