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scnpilot_p_inoc_scaffold_1663

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1663_1
Pseudomonas sp. GM41(2012), Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..291)
DNA (291bp) protein (97aa)
Putative quinone oxidoreductase, YhdH/YhfP family n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J3FZ86_9PSED
Quinone oxidoreductase, YhdH/YhfP family {ECO:0000313|EMBL:EUB74531.1}; TaxID=1144708 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="
zinc-containing alcohol dehydrogenase superfamily protein
scnpilot_p_inoc_scaffold_1663_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(321..1478)
DNA (1158bp) protein (386aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR
Phospho-2-dehydro-3-deoxyheptonate aldolase n=2 Tax=Comamonas testosteroni RepID=D0J7A9_COMT2
phospho-2-dehydro-3-deoxyheptonate aldolase
scnpilot_p_inoc_scaffold_1663_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1702..3162)
DNA (1461bp) protein (487aa)
peptidase C69 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F3A8E
Peptidase u62 modulator of DNA gyrase {ECO:0000313|EMBL:GAD23807.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
peptidase u62 modulator of DNA gyrase
scnpilot_p_inoc_scaffold_1663_4
Alteromonas sp. SN2, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3763..3996)
DNA (234bp) protein (78aa)
Acyltransferase 3 n=1 Tax=Alteromonas sp. (strain SN2) RepID=F5ZD08_ALTSS
acyltransferase 3
Acyltransferase 3 {ECO:0000313|EMBL:AEF03770.1}; TaxID=715451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas sp. (strain
scnpilot_p_inoc_scaffold_1663_5
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4302..5477)
DNA (1176bp) protein (392aa)
Rod shape-determining protein RodA n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q8N3_ACIAP
rod shape-determining protein RodA
Rod shape-determining protein RodA {ECO:0000313|EMBL:ADX44701.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
scnpilot_p_inoc_scaffold_1663_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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5589..6662
DNA (1074bp) protein (358aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
ABC-type uncharacterized transport system, periplasmic component id=4775522 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
scnpilot_p_inoc_scaffold_1663_7
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6662..8965
DNA (2304bp) protein (768aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bra
putative virulence regulator protein n=1 Tax=Janthinobacterium lividum RepID=UPI000287CF02 rbh
two-component hybrid sensor and regulator
scnpilot_p_inoc_scaffold_1663_8
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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8917..9465
DNA (549bp) protein (183aa)
LuxR family transcriptional regulator n=1 Tax=Janthinobacterium lividum RepID=UPI0002896994
Protease production enhancer protein {ECO:0000313|EMBL:EXI68490.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter
LuxR family transcriptional regulator
scnpilot_p_inoc_scaffold_1663_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9621..11303
DNA (1683bp) protein (561aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL74_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21225.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
scnpilot_p_inoc_scaffold_1663_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11391..11975
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WBY5_ACISJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM43760.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain
scnpilot_p_inoc_scaffold_1663_11
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12048..12809
DNA (762bp) protein (254aa)
Calcineurin-like phosphoesterase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHR1_METPP
calcineurin-like phosphoesterase
Calcineurin-like phosphoesterase superfamily domain protein {ECO:0000313|EMBL:EWS56888.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="
scnpilot_p_inoc_scaffold_1663_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12840..14909
DNA (2070bp) protein (690aa)
Ribonuclease II n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GF38_ALIDK
Ribonuclease II {ECO:0000313|EMBL:AEB86142.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrifica
ribonuclease II
scnpilot_p_inoc_scaffold_1663_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14906..15775
DNA (870bp) protein (290aa)
TonB family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR47_ALIDB
tonb family protein
TonB family protein {ECO:0000313|EMBL:GAO21277.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1
scnpilot_p_inoc_scaffold_1663_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15772..16614
DNA (843bp) protein (281aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=
Shikimate dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TR48_ALIDB
shikimate 5-dehydrogenase
scnpilot_p_inoc_scaffold_1663_15
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16611..17333
DNA (723bp) protein (241aa)
monofunctional biosynthetic peptidoglycan transglycosylase id=12550608 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
monofunctional biosynthetic peptidoglycan transglycosylase Tax=GWA2_Burkholderiales_64_37_curated
monofunctional biosynthetic peptidoglycan transglycosylase
scnpilot_p_inoc_scaffold_1663_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17362..17925
DNA (564bp) protein (188aa)
ruvC; holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday
Holliday junction resolvase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000369046B
scnpilot_p_inoc_scaffold_1663_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18110..18850
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSS5_ALIDB rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01526.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
scnpilot_p_inoc_scaffold_1663_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18852..21827)
DNA (2976bp) protein (992aa)
Diguanylate cyclase n=2 Tax=Alicycliphilus denitrificans RepID=E8TSS6_ALIDB rbh
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AEB86480.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alic
scnpilot_p_inoc_scaffold_1663_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22099..22260)
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F6525
Uncharacterized protein {ECO:0000313|EMBL:GAD23816.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
scnpilot_p_inoc_scaffold_1663_20
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22451..23113)
DNA (663bp) protein (221aa)
DSBA oxidoreductase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3S4_ACISJ
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:ABM40899.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS4
scnpilot_p_inoc_scaffold_1663_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23110..24636)
DNA (1527bp) protein (509aa)
AMP-dependent synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003796555 rbh
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II {ECO:0000313|EMBL:GAD23560.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;
AMP-dependent synthetase and ligase
scnpilot_p_inoc_scaffold_1663_22
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24763..26565
DNA (1803bp) protein (601aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XYC5_9RHOO
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
diguanylate cyclase/phosphodiesterase
Displaying 22 items

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