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scnpilot_p_inoc_scaffold_2208

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2208_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..531
-----------------
DNA (531bp)
protein (177aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB46_ACISJ
ribosome small subunit-dependent GTPase A
scnpilot_p_inoc_scaffold_2208_2
Vibrio rumoiensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

674..2203
-----------------
DNA (1530bp)
protein (510aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=76258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source=
Catalase n=1 Tax=Vibrio rumoiensis RepID=Q9FAZ3_9VIBR rbh
catalase
scnpilot_p_inoc_scaffold_2208_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2192..3286)
-----------------
DNA (1095bp)
protein (365aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
Histidinol-phosphate aminotransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQ36_ALIDB
scnpilot_p_inoc_scaffold_2208_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3359..4339)
-----------------
DNA (981bp)
protein (327aa)
Cobalamin biosynthesis protein CobD n=2 Tax=Alicycliphilus denitrificans RepID=E8TQ35_ALIDB
cobalamin biosynthesis protein cbib
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Al
scnpilot_p_inoc_scaffold_2208_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4380..4901)
-----------------
DNA (522bp)
protein (174aa)
DNA mismatch repair protein MutT n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003644099
NTP pyrophosphohydrolases including oxidative damage repair enzymes {ECO:0000313|EMBL:GAD20625.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
nudix hydrolase
scnpilot_p_inoc_scaffold_2208_6
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4990..5376)
-----------------
DNA (387bp)
protein (129aa)
50S ribosomal protein L19 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q945_ACIAP
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovo
scnpilot_p_inoc_scaffold_2208_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5490..6245)
-----------------
DNA (756bp)
protein (252aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDH7_ALIDK
tRNA (guanine-N(1)-)-methyltransferase
scnpilot_p_inoc_scaffold_2208_8
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6258..6830)
-----------------
DNA (573bp)
protein (191aa)
Ribosome maturation factor RimM n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9ME98_ACIET
rimM; 16S rRNA-processing protein rimm
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; A
scnpilot_p_inoc_scaffold_2208_9
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6901..7152)
-----------------
DNA (252bp)
protein (84aa)
30S ribosomal protein S16 n=1 Tax=Acidovorax sp. NO-1 RepID=H0BY24_9BURK
rpsP; 30S ribosomal protein S16 Tax=GWA2_Burkholderiales_64_37_curated
30S ribosomal protein S16
scnpilot_p_inoc_scaffold_2208_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7292..7738
-----------------
DNA (447bp)
protein (149aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036B60EB
hypothetical protein
Predicted membrane protein {ECO:0000313|EMBL:GAD20619.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-
scnpilot_p_inoc_scaffold_2208_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7791..8801)
-----------------
DNA (1011bp)
protein (337aa)
Phosphate transporter n=2 Tax=Acidovorax RepID=A1WB55_ACISJ
phosphate transporter
Phosphate transporter {ECO:0000313|EMBL:ABM43480.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain J
scnpilot_p_inoc_scaffold_2208_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8833..9480)
-----------------
DNA (648bp)
protein (216aa)
phosphate transport regulator n=1 Tax=Comamonas sp. B-9 RepID=UPI0003954E9A
phosphate transport regulator
Phosphate transport regulator {ECO:0000313|EMBL:GAO20428.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
scnpilot_p_inoc_scaffold_2208_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9643..10884
-----------------
DNA (1242bp)
protein (414aa)
patatin id=12549845 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
patatin Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
patatin
scnpilot_p_inoc_scaffold_2208_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10941..13001
-----------------
DNA (2061bp)
protein (687aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:
Methionine--tRNA ligase n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WAZ9_DELAC
methionyl-tRNA synthetase
scnpilot_p_inoc_scaffold_2208_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13052..13714
-----------------
DNA (663bp)
protein (221aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003647493
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:GAD23594.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Ac
amino acid transport-like protein
scnpilot_p_inoc_scaffold_2208_16
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13806..14978)
-----------------
DNA (1173bp)
protein (391aa)
aspartate aminotransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003792EF1
aspartate aminotransferase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_p_inoc_scaffold_2208_17
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15048..15926
-----------------
DNA (879bp)
protein (293aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rul
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUF8_ACIAC
hypothetical protein
scnpilot_p_inoc_scaffold_2208_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15943..16626)
-----------------
DNA (684bp)
protein (228aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A3751
Lipoproteins {ECO:0000313|EMBL:GAD20343.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
rare lipoprotein a
scnpilot_p_inoc_scaffold_2208_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16626..17462)
-----------------
DNA (837bp)
protein (279aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
5,10-methylenetetrahydrofolate reductase id=12550463 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
5,10-methylenetetrahydrofolate reductase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2208_20
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17475..18269)
-----------------
DNA (795bp)
protein (265aa)
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrola
Adenosylhomocysteinase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q3G4_ACIAP
Displaying 20 items

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