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scnpilot_p_inoc_scaffold_1358

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1358_1
unknown

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comp(1..114)
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1358_2
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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192..518
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC66408.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
scnpilot_p_inoc_scaffold_1358_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(574..1278)
DNA (705bp) protein (235aa)
Urea ABC transporter ATPase protein UrtE n=1 Tax=Nitratireductor indicus C115 RepID=K2NYS2_9RHIZ rbh
Urea ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB80021.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
urea ABC transporter ATPase protein UrtE
scnpilot_p_inoc_scaffold_1358_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1275..2024)
DNA (750bp) protein (250aa)
Urea ABC transporter, ATPase protein UrtD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA50_PELHB rbh
Urea ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB80020.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
putative branched-chain amino acid transport ATP-binding protein livG
scnpilot_p_inoc_scaffold_1358_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2029..3228)
DNA (1200bp) protein (400aa)
Urea ABC transporter, permease protein UrtC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA51_PELHB rbh
Amino acid ABC transporter permease {ECO:0000313|EMBL:KKB10033.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinh
urea ABC transporter, permease protein UrtC
scnpilot_p_inoc_scaffold_1358_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3410..5023)
DNA (1614bp) protein (538aa)
Urea ABC transporter permease UrtB n=1 Tax=Nitratireductor indicus C115 RepID=K2P6X1_9RHIZ
Urea ABC transporter permease {ECO:0000313|EMBL:KKB10032.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
urea or short-chain amide ABC transporter permease
scnpilot_p_inoc_scaffold_1358_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5190..6488)
DNA (1299bp) protein (433aa)
Urea ABC transporter, urea binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA53_PELHB rbh
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL29033.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; D
urea ABC transporter, urea binding protein
scnpilot_p_inoc_scaffold_1358_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6726..10286
DNA (3561bp) protein (1187aa)
Two-component hybrid sensor and regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA54_PELHB rbh
ATPase {ECO:0000313|EMBL:KKB10030.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
two-component hybrid sensor and regulator
scnpilot_p_inoc_scaffold_1358_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10273..11202
DNA (930bp) protein (310aa)
Two-component response regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA55_PELHB rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KFL29031.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia ribo
two-component response regulator
scnpilot_p_inoc_scaffold_1358_10
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11833..12639
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFW8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC66400.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1358_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12776..13810
DNA (1035bp) protein (345aa)
ABC transporter substrate-binding protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QQV0_9RHIZ rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB77124.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
NitT/TauT family transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1358_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13934..14725
DNA (792bp) protein (264aa)
ssuB; Aliphatic sulfonates import ATP-binding protein SsuB (EC:3.6.3.-)
ABC transporter nucleotide-binding protein/ATPase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8R3_9RHIZ rbh
Hydroxymethylpyrimidine ABC transporter, ATPase component {ECO:0000313|EMBL:KFC69537.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;
scnpilot_p_inoc_scaffold_1358_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14722..15537
DNA (816bp) protein (272aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0E0_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:KKB10027.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
scnpilot_p_inoc_scaffold_1358_14
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15588..16556
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003737EDC
Polyphosphate kinase {ECO:0000313|EMBL:KFL29028.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1358_15
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16624..18237
DNA (1614bp) protein (538aa)
Diguanylate cyclase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A4H4_RHILW
Uncharacterized protein {ECO:0000313|EMBL:KKC35621.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
diguanylate cyclase
scnpilot_p_inoc_scaffold_1358_16
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18349..20004
DNA (1656bp) protein (552aa)
ABC transporter, ATP-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG15_PELHB rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL29024.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia ribofl
ABC transporter ATP-binding protein
scnpilot_p_inoc_scaffold_1358_17
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20266..21309)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036B4318 rbh
hypothetical protein Tax=GWA2_Burkholderiales_64_37_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1358_18
GWD2_Elusimicrobia_63_28_curated, Elusimicrobia, Bacteria

Not on your lists

21448..22395
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00035D1AAC
OmpA/MotB domain-containing protein Tax=GWD2_Elusimicrobia_63_28_curated
peptidoglycan-associated (lipo)protein
scnpilot_p_inoc_scaffold_1358_19
unknown

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22349..22960
DNA (612bp) protein (204aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1358_20
bacterium YEK0313, Bacteria

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22947..23363
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003792354
Uncharacterized protein {ECO:0000313|EMBL:CEJ13580.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_p_inoc_scaffold_1358_21
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23688..25130
DNA (1443bp) protein (481aa)
Putative PAS sensor two-component histidine kinase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YM27_MOBAS rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB80007.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
sensor histidine kinase
scnpilot_p_inoc_scaffold_1358_22
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25123..25269
DNA (147bp) protein (49aa)
Response regulator receiver protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GQ0_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KKB80006.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
response regulator receiver protein
Displaying 22 items

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