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scnpilot_p_inoc_scaffold_2424

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2424_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..165
DNA (165bp) protein (55aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; Ta
Cytochrome c biogenesis ATP-binding export protein CcmA n=2 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=CCMA_RHOPB
cytochrome c biogenesis protein CcmA
scnpilot_p_inoc_scaffold_2424_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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162..827
DNA (666bp) protein (222aa)
Heme exporter protein B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R709_PELHB
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
scnpilot_p_inoc_scaffold_2424_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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853..1668
DNA (816bp) protein (272aa)
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R708_PELHB rbh
Heme transporter HemC {ECO:0000313|EMBL:KKB78879.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
cytochrome c-type biogenesis protein CcmC heme lyase for CcmE
scnpilot_p_inoc_scaffold_2424_4
unknown

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1665..1811
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2424_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1811..2344
DNA (534bp) protein (178aa)
Periplasmic protein thiol--disulfide oxidoreductase DsbE n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3J9W2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07785.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
scnpilot_p_inoc_scaffold_2424_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2651..2860)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000377FAF8
Uncharacterized protein {ECO:0000313|EMBL:KFL30253.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2424_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2957..3946
DNA (990bp) protein (330aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiac
Protease HtpX homolog n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6F1_PELHB rbh
putative protease htpX-like protein
scnpilot_p_inoc_scaffold_2424_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3955..5256
DNA (1302bp) protein (434aa)
16S rRNA m(5)C 967 methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6E9_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB07787.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
16S rRNA m(5)C 967 methyltransferase
scnpilot_p_inoc_scaffold_2424_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5397..7022
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6E8_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB07788.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2424_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7119..8702
DNA (1584bp) protein (528aa)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6E7_PELHB rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphom
IMP cyclohydrolase
scnpilot_p_inoc_scaffold_2424_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8768..9190)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XZU3_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHH03597.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Ag
hypothetical protein
scnpilot_p_inoc_scaffold_2424_12
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9196..9759)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003762EF7
TadE-like protein {ECO:0000313|EMBL:ETA72431.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;
scnpilot_p_inoc_scaffold_2424_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9756..11762)
DNA (2007bp) protein (669aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000372213C rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM28744.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agr
scnpilot_p_inoc_scaffold_2424_14
unknown

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12055..12579
DNA (525bp) protein (175aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2424_15
unknown

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12643..12780
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying 15 items

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