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scnpilot_p_inoc_scaffold_1864_3

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_4_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: 882..1559

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNP3_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 2.20e-41
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 6.30e-42
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU64143.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" so similarity UNIPROT
DB: UniProtKB
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 3.10e-41

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 678
ATGGTATTGCTTTTTACTCCAAATACTTTATGTCCTTCCTTTTTATTATTTTTATTTTTCAAAACTAACACTGCATTGCCCGGAAAGGATACATACGATGATGCCCTGCTAATTCAGGAATTGCGGCAAAATAATGCTGAAGCATTTATAGAGCTATATAACAGGTATCATGTACAGATGTATAGCTGGCTGATCCGCTTTGTTAAACTTCCCGAGTTTGCTGAAGATATTATCCAGGAAACTTTTTTAAAGATCTGGGAGATCAGGCATCGTCTCAATCCCGCGCAATCTTTTCCTGCCTACCTGTATCGGATAAGCCGTAATAAAGCCTTTAAATCATTGAAGAAAATTTCACTGGATGAAACGCTCAGGAAACAGGTATTGATCCAGTTTGAAATAGAGTCGGATGATCCCGAAAAAAGATTACGATGGTTGCAATACCAGCAGTTGCTCGAAAATGCAGTCAACCGGCTGCCCGCACAACGGCAAAAAGTATTCAAGCTGTGCAGGCAAAACAATAAGACCTACGACGAAGTGGCAAATGAGCTGGGCATTTCCCGTAATACCGTAAAAGAGCACATGGTCAAAGCCATGCAGGACATCCGGCAATACTTCTACCGGTATGGCGAGATCAGCCTCATCCTGTTGTTTTGCAGCCCGGTGCTGATATTGTATTGA
PROTEIN sequence
Length: 226
MVLLFTPNTLCPSFLLFLFFKTNTALPGKDTYDDALLIQELRQNNAEAFIELYNRYHVQMYSWLIRFVKLPEFAEDIIQETFLKIWEIRHRLNPAQSFPAYLYRISRNKAFKSLKKISLDETLRKQVLIQFEIESDDPEKRLRWLQYQQLLENAVNRLPAQRQKVFKLCRQNNKTYDEVANELGISRNTVKEHMVKAMQDIRQYFYRYGEISLILLFCSPVLILY*