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scnpilot_p_inoc_scaffold_2036_5

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_4_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: comp(3744..4298)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJQ6_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 51.9
  • Coverage: 181.0
  • Bit_score: 192
  • Evalue 3.20e-46
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 52.9
  • Coverage: 170.0
  • Bit_score: 192
  • Evalue 1.20e-46
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koree similarity UNIPROT
DB: UniProtKB
  • Identity: 52.9
  • Coverage: 170.0
  • Bit_score: 192
  • Evalue 5.90e-46

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 555
TTGGAATTGCCTGTAGCACAAGAACAACATACAGACCTGGTAGCCCGCTGCCAGGAAGGAGATGCAGTAAGCTTTAAAAAATTGTACGAACAATATGCCCGTGCAATGTTTAATACCAGCCTAAGGATAGTAAATGACAGGACAGAAGCGGAAGATATATTGCAGGAGGCATTCATTGAAGCGTTCCATAATATCAAAACTTTTGAAAACAGGAGCAGCTTTGGAGCCTGGATAAAGAAAATCGTGATCAATAAATCCATAAATCAATTAAAGAAAAAGAAAATAAATATTGTAGAGATAGATGCCGGGCAGCAATATGAAACAGATGCTGAGCCTGTGCACGATGAAAGCGAGACCCGGTGGCAGGTACAGTTGATACTGGACAGTATAAAGAAATTATCGCCGGGGTACAGAACCGTAGTAAGCCTTTACCTGCTCGAAGGATACGACCATGAGGAAATAGCCCAGATAATGGGTGTGGCAGAGTCAACAACCAGAACACAATATATAAGAGGTAAACAAAAACTACTGCAAATACTAAAAGGAGACCAATGA
PROTEIN sequence
Length: 185
LELPVAQEQHTDLVARCQEGDAVSFKKLYEQYARAMFNTSLRIVNDRTEAEDILQEAFIEAFHNIKTFENRSSFGAWIKKIVINKSINQLKKKKINIVEIDAGQQYETDAEPVHDESETRWQVQLILDSIKKLSPGYRTVVSLYLLEGYDHEEIAQIMGVAESTTRTQYIRGKQKLLQILKGDQ*