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scnpilot_p_inoc_scaffold_2398_6

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_4_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: 3687..4562

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK7_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 82.5
  • Coverage: 291.0
  • Bit_score: 473
  • Evalue 1.90e-130
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:KIC95338.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavi similarity UNIPROT
DB: UniProtKB
  • Identity: 82.4
  • Coverage: 289.0
  • Bit_score: 482
  • Evalue 3.50e-133
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 82.5
  • Coverage: 291.0
  • Bit_score: 473
  • Evalue 5.50e-131

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Taxonomy

Flavihumibacter solisilvae → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 876
ATGAGCATGCGTCAACTCAAAATCACGAAATCAATCACGAATCGTGAATCTCAAAGCCTTGAAAAATATCTGCAGGAAATAGGCCGTGTAGAATTGATAGGTTCCGAGGAAGAAGTAAAGCTTGCAGAGATGATCAAGCAGGGTGACCAGAAAGCGCTGGACAGGCTTACCAAAGCAAATCTCCGCTTCGTGGTATCAGTGGCAAAACAGTATCAAAACCAGGGGCTTTCCCTTCCAGACCTGATCAATGAGGGCAATTTCGGGCTGATCAAGGCTGCCCAGCGTTTTGATGAAACCAGGGGCTTTAAGTTCATATCTTATGCCGTGTGGTGGATCAGGCAAAGCATCCTGCAGGCACTGGCAGAACAATCAAGAATAGTAAGGCTGCCGCTGAATAAAGTAGGGCTCACCAACCGCATTAATAAAGCATTTCAGCAACTGGAGCAGGAGTATGAGCGCGAGCCGTCGCCTGAAGAACTGGCGGAAATGCTCGAAATAGACTCCGATGAAATAGCCGCTACCCTTGGTGTGGCTGCAAGGCATGTGAGCATGGACACACCGCTTTCGGAAGGCGAGGACGGCACACTGGTAGACGTGATGGAAAATCCTAATGCCGACAGTGTAGACGAAAAAATAGCGCATCATGAATCACTGAAAAAAGAGATTGAACGGTCGCTGCATACGCTTACAGACCGCCAGCAGGATGTCATAAGATTTTTCTTTGGCATTGGCTTCGATAATCCCATGAGCCTTGAAGACATAGGAGAAAGATTCAACCTTACCCGCGAAAGGGTAAGACAGATAAAAGATAAAGCTATTACCAAGCTCAGGACCACATCAAGGTGCAAGCACCTGAAAACTTACTTAGGCACTTAA
PROTEIN sequence
Length: 292
MSMRQLKITKSITNRESQSLEKYLQEIGRVELIGSEEEVKLAEMIKQGDQKALDRLTKANLRFVVSVAKQYQNQGLSLPDLINEGNFGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKVGLTNRINKAFQQLEQEYEREPSPEELAEMLEIDSDEIAATLGVAARHVSMDTPLSEGEDGTLVDVMENPNADSVDEKIAHHESLKKEIERSLHTLTDRQQDVIRFFFGIGFDNPMSLEDIGERFNLTRERVRQIKDKAITKLRTTSRCKHLKTYLGT*