ggKbase home page

scnpilot_p_inoc_scaffold_900

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_900_1
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84..1433
DNA (1350bp) protein (450aa)
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KJA09230.1}; EC=6.4.1.2 {ECO:0000313|EMBL:KJA09230.1};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Aci
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7M2_ACIDE
acetyl-CoA carboxylase, biotin carboxylase
scnpilot_p_inoc_scaffold_900_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1510..2397
DNA (888bp) protein (296aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_0073
Ribosomal protein L11 methyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GF53_ALIDK rbh
50S ribosomal protein L11 methyltransferase
scnpilot_p_inoc_scaffold_900_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2432..3574
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000377D1C0 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD23797.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
zinc finger/thioredoxin putative
scnpilot_p_inoc_scaffold_900_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3602..4414
DNA (813bp) protein (271aa)
sugar kinase n=1 Tax=Acidovorax radicis RepID=UPI0002375906
ribokinase-like domain-containing protein
Ribokinase-like domain-containing protein {ECO:0000313|EMBL:AFU47664.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acid
scnpilot_p_inoc_scaffold_900_5
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4732..5337
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YVA0_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO86337.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lo
hypothetical protein
scnpilot_p_inoc_scaffold_900_6
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5701..5952)
DNA (252bp) protein (84aa)
Conjugal transfer protein n=7 Tax=Gammaproteobacteria RepID=R9VDG7_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJO79047.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M
scnpilot_p_inoc_scaffold_900_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5949..7208)
DNA (1260bp) protein (420aa)
Conjugation TrbI family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT25_ALIDB
Conjugative transfer protein TrbI {ECO:0000313|EMBL:GAO20568.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycl
conjugative transfer protein TrbI
scnpilot_p_inoc_scaffold_900_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7211..8212)
DNA (1002bp) protein (334aa)
P-type conjugative transfer protein TrbG n=2 Tax=Comamonadaceae RepID=A9BTR5_DELAS
P-type conjugative transfer protein TrbG
Conjugative transfer protein TrbG {ECO:0000313|EMBL:AIJ46186.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas te
scnpilot_p_inoc_scaffold_900_9
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8209..8913)
DNA (705bp) protein (235aa)
Conjugal transfer protein n=2 Tax=Comamonadaceae RepID=A9BTR6_DELAS
VirB8 family protein {ECO:0000313|EMBL:KIN88339.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
conjugal transfer protein TrbF
scnpilot_p_inoc_scaffold_900_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8925..10292)
DNA (1368bp) protein (456aa)
Conjugal transfer protein TrbL n=1 Tax=Ralstonia sp. PBA RepID=I9BTE6_9RALS
conjugal transfer protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AIJ45779.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testo
scnpilot_p_inoc_scaffold_900_11
Cupriavidus oxalaticus, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10289..10612)
DNA (324bp) protein (108aa)
putative lipoprotein id=12551710 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:CAD61155.1}; TaxID=96344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus oxalatic
hypothetical protein
scnpilot_p_inoc_scaffold_900_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10624..11349)
DNA (726bp) protein (242aa)
Conjugal transfer protein TrbJ n=1 Tax=Ralstonia sp. PBA RepID=I9W3M6_9RALS
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:GAO20573.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliph
conjugal transfer protein TrbJ
scnpilot_p_inoc_scaffold_900_13
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11346..13817)
DNA (2472bp) protein (824aa)
VirB4 family type IV secretion/conjugal transfer ATPase n=4 Tax=Pseudomonas aeruginosa RepID=N2D3B7_PSEAI rbh
conjugal transfer ATPase TrbE
CagE TrbE VirB component of type IV transporter system {ECO:0000313|EMBL:ACL72979.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhod
scnpilot_p_inoc_scaffold_900_14
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13830..14102)
DNA (273bp) protein (91aa)
Conjugal transfer protein TrbD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL81_BORPD
trbD1; conjugal transfer protein TrbD
Conjugal transfer protein TrbD {ECO:0000313|EMBL:CAP42551.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petr
scnpilot_p_inoc_scaffold_900_15
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14099..14482)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JKZ9_AERHY
Uncharacterized protein {ECO:0000313|EMBL:EKB27238.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SS
trbC; conjugal transfer protein Trbc
scnpilot_p_inoc_scaffold_900_16
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14479..15558)
DNA (1080bp) protein (360aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WJA7_PSEAI rbh
P-type conjugative transfer ATPase TrbB
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ACL72976.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thi
scnpilot_p_inoc_scaffold_900_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15555..16019)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P5E2_PSEAI
copg domain-containing protein DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ACM34932.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source=
scnpilot_p_inoc_scaffold_900_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16016..18016)
DNA (2001bp) protein (667aa)
Type IV secretion system protein VirD4 n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WS14_DELAC
conjugal transfer protein TraG
Conjugal transfer protein TraG {ECO:0000313|EMBL:AIJ46945.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testo
scnpilot_p_inoc_scaffold_900_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18530..19423)
DNA (894bp) protein (298aa)
Putative LysR family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTE7_STRMK rbh
LysR family transcriptional regulator rbh
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CAQ44844.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas;
scnpilot_p_inoc_scaffold_900_20
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19929..21275)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MX21_CORCM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFE04837.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Cor
scnpilot_p_inoc_scaffold_900_21
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21276..21902)
DNA (627bp) protein (209aa)
HAD superfamily hydrolase (EC:3.1.3.18)
Hydrolase, haloacid dehalogenase-like family {ECO:0000313|EMBL:CAL95234.1}; EC=3.1.3.18 {ECO:0000313|EMBL:CAL95234.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales
Hydrolase, haloacid dehalogenase-like family n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K8S9_AZOSB
scnpilot_p_inoc_scaffold_900_22
Luminiphilus syltensis, Luminiphilus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21915..22727)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE11 RepID=UPI000372C154
Uncharacterized protein {ECO:0000313|EMBL:EED34902.1}; TaxID=565045 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Luminiphilus.;" source="Luminiphilus syltensis NOR5-1
sterol desaturase
scnpilot_p_inoc_scaffold_900_23
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22737..23306)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q4I3_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44354.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
scnpilot_p_inoc_scaffold_900_24
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23423..24367)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Kushneria aurantia RepID=UPI0003738B74
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL47211.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
scnpilot_p_inoc_scaffold_900_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24378..25727)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X0Y6_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD43820.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
hypothetical protein
scnpilot_p_inoc_scaffold_900_26
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25964..26419
DNA (456bp) protein (152aa)
GCN5 family N-acetyltransferase n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PUQ3_9BURK
GCN5 family acetyltransferase
GCN5 family acetyltransferase {ECO:0000313|EMBL:AKC70418.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxala
scnpilot_p_inoc_scaffold_900_27
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26534..27751
DNA (1218bp) protein (406aa)
LuxR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377F7F
LuxR family transcriptional regulator Tax=GWA2_Burkholderiales_64_37_curated
hypothetical protein
scnpilot_p_inoc_scaffold_900_28
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27764..29722)
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTG0_STRMK
Relaxase type IV secretory pathway VirD2 {ECO:0000313|EMBL:GAO23977.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="
type VI secretion protein
scnpilot_p_inoc_scaffold_900_29
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29719..30162)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CHC3_ALCDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFT71031.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dies
scnpilot_p_inoc_scaffold_900_30
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30159..30746)
DNA (588bp) protein (196aa)
Conjugal transfer protein TraF n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL24_BORPD
traF1; conjugal transfer protein TraF
Conjugal transfer protein TraF {ECO:0000313|EMBL:CAP42530.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petr
Displaying items 1-30 of 65 in total

View Taxonomy