ggKbase home page

scnpilot_p_inoc_scaffold_1158

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1158_1
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1..105
DNA (105bp) protein (35aa)
50S ribosomal protein L6 n=3 Tax=cellular organisms RepID=S2WAL8_DELAC
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.
rplF; 50S ribosomal protein L6
scnpilot_p_inoc_scaffold_1158_2
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


117..482
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=4 Tax=Delftia RepID=RL18_DELAS
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatens
scnpilot_p_inoc_scaffold_1158_3
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


498..1016
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=2 Tax=Acidovorax RepID=RS5_ACIET rbh
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (s
scnpilot_p_inoc_scaffold_1158_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1029..1211
DNA (183bp) protein (61aa)
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
50S ribosomal protein L30 id=1270863 bin=GWE1_Burkholderiales_65_30 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rpmD; 50S ribosomal protein L30
scnpilot_p_inoc_scaffold_1158_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1222..1653
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUF8_ALIDB
50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycl
scnpilot_p_inoc_scaffold_1158_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1678..2997
DNA (1320bp) protein (440aa)
Protein translocase subunit SecY n=4 Tax=Delftia RepID=A9BRX1_DELAS rbh
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
scnpilot_p_inoc_scaffold_1158_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3130..3243
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=11 Tax=Comamonadaceae RepID=RL36_ACIET
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycl
scnpilot_p_inoc_scaffold_1158_8
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3268..3633
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=2 Tax=Acidovorax RepID=RS13_ACIAC
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avena
scnpilot_p_inoc_scaffold_1158_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3651..4055
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=4 Tax=Comamonas testosteroni RepID=D0IV19_COMT2
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testost
scnpilot_p_inoc_scaffold_1158_10
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4145..4768
DNA (624bp) protein (208aa)
30S ribosomal protein S4 n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002E105FC
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatic
rpsD; 30S ribosomal protein S4
scnpilot_p_inoc_scaffold_1158_11
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4869..5867
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=4 Tax=Delftia RepID=RPOA_DELAS
scnpilot_p_inoc_scaffold_1158_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5957..6355
DNA (399bp) protein (133aa)
ribosomal protein l17; K02879 large subunit ribosomal protein L17 id=12550913 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ribosomal protein l17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
50S ribosomal protein L17
scnpilot_p_inoc_scaffold_1158_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7064..9142)
DNA (2079bp) protein (693aa)
arsA; arsenical pump-driving ATPase ArsA (EC:3.6.3.16)
Arsenical pump-driving ATPase ArsA n=1 Tax=Variovorax paradoxus B4 RepID=T1XM42_VARPD rbh
Arsenical pump-driving ATPase ArsA {ECO:0000313|EMBL:GAO25323.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyc
scnpilot_p_inoc_scaffold_1158_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9157..9480
DNA (324bp) protein (108aa)
Putative transcriptional regulator, ArsR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T840_ACIDE
ArsR family transcriptional regulator {ECO:0000313|EMBL:GAO21140.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Ali
arsR family transcriptional regulator
scnpilot_p_inoc_scaffold_1158_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9495..10061
DNA (567bp) protein (189aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T839_ACIDE
Glyoxalase/bleomycin resistance protein {ECO:0000313|EMBL:GAO25321.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="A
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_p_inoc_scaffold_1158_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10065..10568
DNA (504bp) protein (168aa)
UPI0003A410E9 related cluster n=1 Tax=unknown RepID=UPI0003A410E9
Protein tyrosine phosphatase {ECO:0000313|EMBL:GAO21142.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
protein tyrosine phosphatase
scnpilot_p_inoc_scaffold_1158_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10549..11643
DNA (1095bp) protein (365aa)
Arsenical-resistance protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T838_ACIDE rbh
ACR3 family arsenite transporter {ECO:0000313|EMBL:GAO25319.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycli
arsenical-resistance protein
scnpilot_p_inoc_scaffold_1158_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11802..12251)
DNA (450bp) protein (150aa)
UPI0003D3BFF6 related cluster n=1 Tax=unknown RepID=UPI0003D3BFF6
Uncharacterized protein {ECO:0000313|EMBL:GAD22069.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
scnpilot_p_inoc_scaffold_1158_19
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12364..12663
DNA (300bp) protein (100aa)
XRE family transcriptional regulator id=12551647 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
PbsX family transcriptional regulator Tax=GWA2_Burkholderiales_64_37_curated
helix-turn-helix family protein
scnpilot_p_inoc_scaffold_1158_20
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12660..13094)
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTD1_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24411.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp
hypothetical protein
scnpilot_p_inoc_scaffold_1158_21
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13286..13723
DNA (438bp) protein (146aa)
Helix-turn-helix domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BXY9_9BURK
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EHL22949.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
helix-turn-helix domain-containing protein
scnpilot_p_inoc_scaffold_1158_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13781..14323)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BSY9_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX34349.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (stra
scnpilot_p_inoc_scaffold_1158_23
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14495..15631
DNA (1137bp) protein (379aa)
cell filamentation protein Fic n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348A260 rbh
filamentation induced by cAMP protein fic
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ABE41981.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Pol
scnpilot_p_inoc_scaffold_1158_24
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15898..16575
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGI3_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM94672.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM
scnpilot_p_inoc_scaffold_1158_25
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16582..17343
DNA (762bp) protein (254aa)
Transposase, IS4 family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120T2_POLSJ
IS4 family transposase
Transposase, IS4 family {ECO:0000313|EMBL:ABE46960.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (stra
scnpilot_p_inoc_scaffold_1158_26
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17632..18768)
DNA (1137bp) protein (379aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB89_ACIAP rbh
peptidase C14 caspase catalytic subunit p20 rbh
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ADX44951.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Ac
scnpilot_p_inoc_scaffold_1158_27
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18773..21241)
DNA (2469bp) protein (823aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB90_ACIAP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADX44952.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (str
scnpilot_p_inoc_scaffold_1158_28
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21241..22077)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB91_ACIAP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADX44953.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (str
scnpilot_p_inoc_scaffold_1158_29
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22070..23038)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB92_ACIAP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADX44954.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (str
scnpilot_p_inoc_scaffold_1158_30
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23035..24324)
DNA (1290bp) protein (430aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB93_ACIAP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADX44955.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (str
Displaying items 1-30 of 34 in total

View Taxonomy