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scnpilot_p_inoc_scaffold_2070

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2070_1
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..211
DNA (210bp) protein (70aa)
TonB-dependent receptor n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6APS5_DELSC
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEF91675.1}; Flags: Precursor;; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delfti
scnpilot_p_inoc_scaffold_2070_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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229..828
DNA (600bp) protein (200aa)
Electron transport protein SCO1/SenC n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6A6_VARPE
electron transport protein sco1/senc
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:ADU39415.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;
scnpilot_p_inoc_scaffold_2070_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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855..1316
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Comamonadaceae RepID=A9BTR2_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ46189.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni
scnpilot_p_inoc_scaffold_2070_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1470..1859)
DNA (390bp) protein (130aa)
Transposase-like protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WQW2_COMTE
Transposase-like protein {ECO:0000313|EMBL:EED67107.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni
putative transposase
scnpilot_p_inoc_scaffold_2070_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2468..2728)
DNA (261bp) protein (87aa)
transposase IS1353 n=1 Tax=Comamonas testosteroni RepID=UPI0002DF7090
Transposase IS1353 {ECO:0000313|EMBL:KGH06927.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudom
integrase catalytic subunit
scnpilot_p_inoc_scaffold_2070_6
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2861..3262
DNA (402bp) protein (134aa)
Transposase IS3/IS911 family protein n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z430_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:KGH08329.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Ps
insertion sequence 2 OrfA protein
scnpilot_p_inoc_scaffold_2070_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3259..4098
DNA (840bp) protein (280aa)
transposase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7C1C rbh
Transposase {ECO:0000313|EMBL:KGH08330.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas te
insD; IS2 insertion element transposase InsAB'; CP4-44 prophage
scnpilot_p_inoc_scaffold_2070_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4155..4325)
DNA (171bp) protein (57aa)
LysR substrate-binding protein n=2 Tax=Proteobacteria RepID=E8TV38_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00570.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
scnpilot_p_inoc_scaffold_2070_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4268..4762)
DNA (495bp) protein (165aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ7_ACIET
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO26441.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Ali
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_2070_10
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4799..5302)
DNA (504bp) protein (168aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|SAAS:SAAS00103216}; EC=3.5.4.19 {ECO:0000256|SAAS:SAAS00103216};; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Co
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X909_DELAC
phosphoribosyl-AMP cyclohydrolase
scnpilot_p_inoc_scaffold_2070_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5322..5756)
DNA (435bp) protein (145aa)
Fur family transcriptional regulator, ferric uptake regulator n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WQU5_DELAC
Fur family transcriptional regulator, ferric uptake regulator {ECO:0000313|EMBL:EPD41671.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delfti
ferric uptake regulator family protein
scnpilot_p_inoc_scaffold_2070_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5749..7146)
DNA (1398bp) protein (466aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WUI3_DELAC rbh
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;
scnpilot_p_inoc_scaffold_2070_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7143..9188)
DNA (2046bp) protein (682aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; thrS: threonine--tRNA ligase (EC:6.1.1.3) rbh
Threonine--tRNA ligase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XQA7_DELAC rbh
scnpilot_p_inoc_scaffold_2070_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9185..9913)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WPH7_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD41668.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
glcNAc-PI de-N-acetylase family protein
scnpilot_p_inoc_scaffold_2070_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9938..10498)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X904_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD41667.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
bacterial transferase hexapeptide family protein
scnpilot_p_inoc_scaffold_2070_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10495..10752)
DNA (258bp) protein (86aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WQT8_DELAC
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
hemolytic domain protein
scnpilot_p_inoc_scaffold_2070_17
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10749..12155)
DNA (1407bp) protein (469aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysS; cysS: cysteine--tRNA ligase (EC:6.1.1.16) rbh
Cysteine--tRNA ligase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WUH5_DELAC rbh
scnpilot_p_inoc_scaffold_2070_18
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12152..13318)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XQA2_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD41664.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
cobalamin synthesis cobW C-terminal domain protein
scnpilot_p_inoc_scaffold_2070_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13315..14229)
DNA (915bp) protein (305aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
GTP cyclohydrolase FolE2 n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WPH1_DELAC rbh
type I GTP cyclohydrolase folE2 family protein rbh
scnpilot_p_inoc_scaffold_2070_20
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14493..15464)
DNA (972bp) protein (324aa)
Cobalamin synthesis protein/P47K n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UR47_ALCFA
Cobalamin synthesis protein/P47K {ECO:0000313|EMBL:EJC63108.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes
hypothetical protein
scnpilot_p_inoc_scaffold_2070_21
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15507..15896)
DNA (390bp) protein (130aa)
Ferric uptake regulator family protein n=2 Tax=Burkholderia pseudomallei RepID=S5NN46_BURPE
ferric uptake regulator family protein
Putative ferric uptake regulator, Fur family protein {ECO:0000313|EMBL:AEA62639.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
scnpilot_p_inoc_scaffold_2070_22
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16042..16485
DNA (444bp) protein (148aa)
Fur family transcriptional regulator n=1 Tax=Comamonas sp. B-9 RepID=UPI0003958120
Ferric uptake regulator family protein {ECO:0000313|EMBL:EKF44376.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="
ferric uptake regulator family protein
scnpilot_p_inoc_scaffold_2070_23
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(16515..18797)
DNA (2283bp) protein (761aa)
hypothetical protein n=1 Tax=Microchaete sp. PCC 7126 RepID=UPI000349D99A
TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein
TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein {ECO:0000313|EMBL:AFY51142.1}; Flags: Precursor;; TaxID=28072 species="
scnpilot_p_inoc_scaffold_2070_24
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18877..19917
DNA (1041bp) protein (347aa)
CobN/magnesium chelatase n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IVC3_CYCMS
CobN/magnesium chelatase
CobN/magnesium chelatase {ECO:0000313|EMBL:AEL27922.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (st
Displaying 24 items

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