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scnpilot_p_inoc_scaffold_1014_19

Organism: SCNpilot_P_inoc_Acidovorax_64_34

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 14 / 38
Location: comp(16091..16639)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Acidovorax radicis RepID=UPI000237558C similarity UNIREF
DB: UNIREF100
  • Identity: 93.8
  • Coverage: 178.0
  • Bit_score: 332
  • Evalue 3.40e-88
  • rbh
RNA polymerase Sigma Factor Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 182.0
  • Bit_score: 345
  • Evalue 4.10e-92
RNA polymerase Sigma Factor similarity KEGG
DB: KEGG
  • Identity: 95.2
  • Coverage: 168.0
  • Bit_score: 319
  • Evalue 6.40e-85

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Taxonomy

RLO_Burkholderiales_64_33 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGAGCAACCCCATGACCGCACCCACACTCGCCCAGCTGCTTCCCGCCGCGCGCAGCGGAAATGCCGTGGCGATGGAGCAGCTGCTGCGCCTCACCCGCCCCGACATCCGCCGCTATGCGCTGCGCCACTGCGCCGCCACCACGGCCACCGACGACGTGGTGCAGGAGGCGCTCATCATCGTTTACCGCCGCGTGGGCGCGCTGCGCGAGGTGGCGGCGTTTGGTGGCTGGGTGGTGCGCATCGTGCAGCGCCTGTGCATGCGGCCGATGCTGGCGTGGCTCAAGGCCGAGCCACTGGCGCAAGTCGAAGACAACCTCGCCTGGTCGCACCGCCCCGACCACGAGCTGCGCCACGACCTGGCCCTGGCCATCGACTCACTGCCGCCCCTGTACCGCGAGGCCCTGCTGCTGCGCGACTTCGAGGAGCTGACCATCGAGGAGATGGCGCAGCGGCTTGGGGTGACGCGCGAGGCCGCCAAAAGCCGACTGCACCGGGCAAGGGCCCTGGTGCGCGAGTACCTGGTGCCATCGGCGCCTGCGGCTCGCTGA
PROTEIN sequence
Length: 183
MSNPMTAPTLAQLLPAARSGNAVAMEQLLRLTRPDIRRYALRHCAATTATDDVVQEALIIVYRRVGALREVAAFGGWVVRIVQRLCMRPMLAWLKAEPLAQVEDNLAWSHRPDHELRHDLALAIDSLPPLYREALLLRDFEELTIEEMAQRLGVTREAAKSRLHRARALVREYLVPSAPAAR*