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SCNpilot_P_inoc_Acidovorax_64_34

SCNpilot_P_inoc_Burkholderiales_64_34
In projects: SCNpilot_P_inoc  |  SCN_92

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

don't curate

Displaying items 1-50 of 97 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
scnpilot_p_inoc_scaffold_145
Order: Burkholderiales (93.92%)
329 360490 bp 64.48 33.89 90.13
scnpilot_p_inoc_scaffold_51
Order: Burkholderiales (98.68%)
302 317148 bp 65.12 30.96 90.07
scnpilot_p_inoc_scaffold_52
Order: Burkholderiales (94.78%)
268 317098 bp 64.31 29.37 89.91
scnpilot_p_inoc_scaffold_104
Order: Burkholderiales (99.17%)
241 272511 bp 65.99 38.11 89.45
scnpilot_p_inoc_scaffold_257
Order: Burkholderiales (92.41%)
237 265975 bp 64.54 37.87 87.78
scnpilot_p_inoc_scaffold_352
Order: Burkholderiales (98.4%)
187 196710 bp 62.56 32.86 89.74
scnpilot_p_inoc_scaffold_147
Order: Burkholderiales (99.37%)
158 184560 bp 65.13 33.29 90.18
scnpilot_p_inoc_scaffold_390
Order: Burkholderiales (100%)
149 174968 bp 65.37 37.57 91.24
scnpilot_p_inoc_scaffold_192
Order: Burkholderiales (99.33%)
149 157793 bp 63.03 31.09 92.18
scnpilot_p_inoc_scaffold_170
Order: Burkholderiales (99.32%)
148 170236 bp 64.58 30.37 90.76
scnpilot_p_inoc_scaffold_269
Order: Burkholderiales (96.72%)
122 121779 bp 65.11 35.36 90.14
scnpilot_p_inoc_scaffold_357
Order: Burkholderiales (99.1%)
111 127964 bp 64.93 30.51 86.98
scnpilot_p_inoc_scaffold_279
Order: Burkholderiales (99.09%)
110 119280 bp 63.65 34.84 86.59
scnpilot_p_inoc_scaffold_295
Order: Burkholderiales (96.15%)
104 115408 bp 65.46 38.45 88.54
scnpilot_p_inoc_scaffold_301
Order: Burkholderiales (91%)
100 113799 bp 62.91 30.32 89.22
scnpilot_p_inoc_scaffold_313
Order: Burkholderiales (98.99%)
99 110164 bp 65.35 32.68 87.83
scnpilot_p_inoc_scaffold_561
Order: Burkholderiales (60.42%)
96 81089 bp 59.82 34.88 83.91
scnpilot_p_inoc_scaffold_386
Order: Burkholderiales (97.8%)
91 91692 bp 64.43 41.28 87.96
scnpilot_p_inoc_scaffold_419
Order: Burkholderiales (98.84%)
86 92546 bp 65.38 36.70 90.24
scnpilot_p_inoc_scaffold_459
Order: Burkholderiales (95.18%)
83 94573 bp 64.83 33.46 89.13
scnpilot_p_inoc_scaffold_401
Order: Burkholderiales (98.78%)
82 89873 bp 65.81 32.33 90.08
scnpilot_p_inoc_scaffold_579
Order: Burkholderiales (97.53%)
81 95097 bp 63.54 31.59 86.47
scnpilot_p_inoc_scaffold_748
Order: Burkholderiales (96.15%)
78 88392 bp 64.78 35.30 89.69
scnpilot_p_inoc_scaffold_642
Order: Burkholderiales (94.81%)
77 100586 bp 64.86 33.36 88.74
scnpilot_p_inoc_scaffold_720
Order: Burkholderiales (97.4%)
77 75209 bp 66.01 38.74 86.72
scnpilot_p_inoc_scaffold_555
Order: Burkholderiales (82.43%)
74 81055 bp 63.15 28.57 87.91
scnpilot_p_inoc_scaffold_402
Order: Burkholderiales (93.24%)
74 86718 bp 64.10 35.91 89.97
scnpilot_p_inoc_scaffold_524
Order: Burkholderiales (100%)
73 85893 bp 64.89 32.39 89.03
scnpilot_p_inoc_scaffold_409
Order: Burkholderiales (98.59%)
71 85645 bp 65.19 29.75 89.73
scnpilot_p_inoc_scaffold_475
Order: Burkholderiales (97.14%)
70 74666 bp 64.50 29.85 91.30
scnpilot_p_inoc_scaffold_435
Order: Burkholderiales (100%)
65 80462 bp 64.43 30.08 88.12
scnpilot_p_inoc_scaffold_486
Order: Burkholderiales (98.44%)
64 73768 bp 65.10 34.01 91.73
scnpilot_p_inoc_scaffold_820
Order: Burkholderiales (80.95%)
63 57846 bp 64.09 36.36 90.66
scnpilot_p_inoc_scaffold_519
Order: Burkholderiales (100%)
60 67780 bp 66.49 36.92 92.45
scnpilot_p_inoc_scaffold_594
Order: Burkholderiales (96.61%)
59 57981 bp 62.97 30.04 86.19
scnpilot_p_inoc_scaffold_574
Order: Burkholderiales (100%)
55 60907 bp 63.74 28.74 89.34
scnpilot_p_inoc_scaffold_643
Order: Burkholderiales (79.63%)
54 53863 bp 62.08 36.16 84.09
scnpilot_p_inoc_scaffold_736
Order: Burkholderiales (98.04%)
51 45544 bp 63.78 36.01 90.04
scnpilot_p_inoc_scaffold_1215
Genus: Acidovorax (53.49%)
43 52690 bp 69.23 31.24 94.31
scnpilot_p_inoc_scaffold_709
Order: Burkholderiales (97.62%)
42 48090 bp 63.38 29.06 90.03
scnpilot_p_inoc_scaffold_1298
Order: Burkholderiales (97.5%)
40 27874 bp 62.60 35.13 91.53
scnpilot_p_inoc_scaffold_758
Order: Burkholderiales (97.44%)
39 44085 bp 63.27 29.31 90.96
scnpilot_p_inoc_scaffold_1013
Species: R_Burkholderiales_64_960 (50%)
38 30879 bp 60.31 35.86 85.18
scnpilot_p_inoc_scaffold_751
Order: Burkholderiales (100%)
38 44269 bp 64.47 31.15 85.66
scnpilot_p_inoc_scaffold_1532
Order: Burkholderiales (97.3%)
37 38449 bp 65.41 31.04 86.83
scnpilot_p_inoc_scaffold_764
Order: Burkholderiales (94.59%)
37 43905 bp 60.67 32.94 86.32
scnpilot_p_inoc_scaffold_1014
Order: Burkholderiales (97.14%)
35 33088 bp 66.05 38.45 88.08
scnpilot_p_inoc_scaffold_927
Order: Burkholderiales (88.57%)
35 34741 bp 63.73 30.15 93.13
scnpilot_p_inoc_scaffold_696
Order: Burkholderiales (94.12%)
34 48754 bp 63.41 31.75 87.15
scnpilot_p_inoc_scaffold_818
Order: Burkholderiales (96.88%)
32 40163 bp 65.80 29.77 92.33
Displaying items 1-50 of 97 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.