ggKbase home page

scnpilot_p_inoc_scaffold_257

Search features with annotation key words

Displaying items 1-30 of 237 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_257_1
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1106)
DNA (1104bp) protein (368aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32) Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Acidovorax sp. KKS102 RepID=K0HLU7_9BURK
scnpilot_p_inoc_scaffold_257_2
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1400..2110)
DNA (711bp) protein (237aa)
7-cyano-7-deazaguanine synthase n=1 Tax=Acidovorax radicis RepID=UPI00023786BF rbh
exsB protein Tax=GWA2_Burkholderiales_64_37_curated
exsB protein
scnpilot_p_inoc_scaffold_257_3
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2199..2345)
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWW6_9BURK
hypothetical protein Tax=GWA2_Burkholderiales_64_37_curated
hypothetical protein
scnpilot_p_inoc_scaffold_257_4
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2422..3621)
DNA (1200bp) protein (400aa)
threonine dehydratase (EC:4.3.1.19) Tax=GWA2_Burkholderiales_64_37_curated
threonine dehydratase (EC:4.3.1.19)
threonine dehydratase n=1 Tax=Acidovorax radicis RepID=UPI00023786C1 rbh
scnpilot_p_inoc_scaffold_257_5
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3736..5361)
DNA (1626bp) protein (542aa)
transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI00023786C2 rbh
anaerobic nitric oxide reductase transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
anaerobic nitric oxide reductase transcriptional regulator
scnpilot_p_inoc_scaffold_257_6
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5540..7822
DNA (2283bp) protein (761aa)
nitric oxide reductase large subunit n=1 Tax=Acidovorax radicis RepID=UPI00023786C3 rbh
nitric oxide reductase large subunit Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
nitric oxide reductase large subunit
scnpilot_p_inoc_scaffold_257_7
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7894..8322
DNA (429bp) protein (143aa)
Hemerythrin hhe cation-binding domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV9_9BURK
hemerythrin HHE cation-binding domain-containing protein Tax=GWA2_Burkholderiales_64_37_curated
hemerythrin HHE cation-binding domain-containing protein
scnpilot_p_inoc_scaffold_257_8
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8541..9716
DNA (1176bp) protein (392aa)
Anaerobic ribonucleoside triphosphate reductase {ECO:0000313|EMBL:EHL23014.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EHL23014.1};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside triphosphate reductase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV8_9BURK
scnpilot_p_inoc_scaffold_257_9
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9667..10440
DNA (774bp) protein (258aa)
anaerobic ribonucleoside-triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
Anaerobic ribonucleoside triphosphate reductase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV8_9BURK
anaerobic ribonucleoside-triphosphate reductase
scnpilot_p_inoc_scaffold_257_10
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10539..10748
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV7_9BURK
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
hypothetical protein
scnpilot_p_inoc_scaffold_257_11
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10726..11430
DNA (705bp) protein (235aa)
anaerobic ribonucleoside-triphosphate reductase activating protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
ribonucleoside-triphosphate reductase activating protein n=1 Tax=Acidovorax radicis RepID=UPI00023751FD rbh
anaerobic ribonucleoside-triphosphate reductase activating protein
scnpilot_p_inoc_scaffold_257_12
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11619..13277
DNA (1659bp) protein (553aa)
phenylpyruvate decarboxylase (EC:4.1.1.43); K04103 indolepyruvate decarboxylase [EC:4.1.1.74] Tax=GWA2_Burkholderiales_64_37_curated
phenylpyruvate decarboxylase (EC:4.1.1.43)
indole-3-pyruvate decarboxylase n=1 Tax=Acidovorax radicis RepID=UPI00023751FE rbh
scnpilot_p_inoc_scaffold_257_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13346..15220)
DNA (1875bp) protein (625aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV2_9BURK rbh
ATP-dependent DNA helicase RecQ Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
ATP-dependent DNA helicase RecQ
scnpilot_p_inoc_scaffold_257_14
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15391..16845)
DNA (1455bp) protein (485aa)
GntR-family transcriptional regulator n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A0S1_SERMA rbh
GntR family transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
GntR family transcriptional regulator
scnpilot_p_inoc_scaffold_257_15
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16954..17427
DNA (474bp) protein (158aa)
Sulfurtransferase n=1 Tax=Serratia plymuthica 4Rx13 RepID=S0AK29_SERPL
sulfurtransferase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
rhodanese-like protein
scnpilot_p_inoc_scaffold_257_16
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17421..17888
DNA (468bp) protein (156aa)
Acetyltransferase (EC:2.3.1.-) Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000370FE34
hypothetical protein
scnpilot_p_inoc_scaffold_257_17
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17943..19286)
DNA (1344bp) protein (448aa)
Sigma-54 dependent transcription regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSI4_9BURK rbh
Sigma-54 dependent transcription regulator {ECO:0000313|EMBL:EHL24646.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
sigma-54 dependent trancsriptional regulator
scnpilot_p_inoc_scaffold_257_18
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19424..19603
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y705_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO90026.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lo
hypothetical protein
scnpilot_p_inoc_scaffold_257_19
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19600..21165
DNA (1566bp) protein (522aa)
Cytochrome d terminal oxidase subunit 1 {ECO:0000313|EMBL:KGM40037.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp.
Cytochrome d ubiquinol oxidase subunit I id=1274599 bin=GWE1_Burkholderiales_65_30 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
cytochrome d terminal oxidase subunit 1
scnpilot_p_inoc_scaffold_257_20
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21186..22322
DNA (1137bp) protein (379aa)
cytochrome d ubiquinol oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-] id=5082921 bin=GWF1_Burkholderiales_GWF1_66_17 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Cytochrome d ubiquinol oxidase subunit 2 {ECO:0000313|EMBL:KGM40038.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp.
transmembrane cytochrome oxidase subunit II
scnpilot_p_inoc_scaffold_257_21
Pseudomonas extremaustralis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22377..22499
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida ND6 RepID=I3UNR3_PSEPU
hypothetical protein
Membrane protein {ECO:0000313|EMBL:EZI27215.1}; TaxID=1117958 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas extremaustra
scnpilot_p_inoc_scaffold_257_22
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22501..22830
DNA (330bp) protein (110aa)
Membrane protein {ECO:0000313|EMBL:KGM42028.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein id=5082916 bin=GWF1_Burkholderiales_GWF1_66_17 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
memnrane protein
scnpilot_p_inoc_scaffold_257_23
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22844..23509
DNA (666bp) protein (222aa)
beta-lactamase domain-containing protein; K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Beta-lactamase domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR45_POLNA
beta-lactamase domain-containing protein
scnpilot_p_inoc_scaffold_257_24
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23466..24182
DNA (717bp) protein (239aa)
Methyltransferase type 11 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8E0_ACISJ
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABM42515.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (stra
scnpilot_p_inoc_scaffold_257_25
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24214..25350
DNA (1137bp) protein (379aa)
fad-dependent pyridine nucleotide-disulfide oxidoreductase id=12551786 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EIZ04772.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralston
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
scnpilot_p_inoc_scaffold_257_26
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25582..26646
DNA (1065bp) protein (355aa)
Methionine synthase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWU7_9BURK rbh
methionine synthase Tax=GWA2_Burkholderiales_64_37_curated
methionine synthase
scnpilot_p_inoc_scaffold_257_27
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26931..27866
DNA (936bp) protein (312aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWU6_9BURK rbh
tRNA 2-thiocytidine biosynthesis protein TtcA Tax=GWA2_Burkholderiales_64_37_curated
tRNA 2-thiocytidine biosynthesis protein TtcA
scnpilot_p_inoc_scaffold_257_28
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27903..29345
DNA (1443bp) protein (481aa)
protease n=1 Tax=Acidovorax radicis RepID=UPI0002375205 rbh
protease Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
protease
scnpilot_p_inoc_scaffold_257_29
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29411..29722)
DNA (312bp) protein (104aa)
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_30
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29861..30862)
DNA (1002bp) protein (334aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002376007 rbh
LysR family transcriptional regulator Tax=GWA2_Burkholderiales_64_37_curated
LysR family transcriptional regulator
Displaying items 1-30 of 237 in total

View Taxonomy