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scnpilot_p_inoc_scaffold_2063

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2063_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72..1634
DNA (1563bp) protein (521aa)
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003702E01 rbh
scnpilot_p_inoc_scaffold_2063_2

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1931..3187
DNA (1257bp) protein (419aa)
phage integrase family protein id=12498573 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
Integrase {ECO:0000313|EMBL:CBH97703.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2063_3

Not on your lists

comp(3165..3536)
DNA (372bp) protein (124aa)
phage transcriptional regulator AlpA id=12498574 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:CBH97702.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phage transcriptional regulator AlpA
scnpilot_p_inoc_scaffold_2063_4
unknown

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3918..4139
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2063_5
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4112..4363
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037E2A6E
Uncharacterized protein {ECO:0000313|EMBL:EPZ15169.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
LacI family transcriptional regulator
scnpilot_p_inoc_scaffold_2063_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4332..4766)
DNA (435bp) protein (145aa)
MerR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WMZ0_9GAMM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGG90849.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhoda
scnpilot_p_inoc_scaffold_2063_7
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4769..6073)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000372F088 rbh
hypothetical protein
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44539.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
scnpilot_p_inoc_scaffold_2063_8
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6070..6348)
DNA (279bp) protein (93aa)
thioredoxin/glutaredoxin Tax=RBG_16_Gamma2_64_11_curated
thioredoxin/glutaredoxin
Thioredoxin/glutaredoxin id=1311325 bin=GWE1_T_denit_62_9 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_p_inoc_scaffold_2063_9
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6495..7076
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6H6_THIK1
hypothetical protein; K03805 thiol:disulfide interchange protein DsbG Tax=RBG_16_Betaproteobacteria_66_20_curated
hypothetical protein
scnpilot_p_inoc_scaffold_2063_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7114..7542
DNA (429bp) protein (143aa)
DUF1791 protein id=1311322 bin=GWE1_T_denit_62_9 species=Halothiobacillus neapolitanus genus=Halothiobacillus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_2063_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7565..9202)
DNA (1638bp) protein (546aa)
putative mercuric reductase; K00520 mercuric reductase [EC:1.16.1.1] Tax=GWE1_Thiobacillus_62_9_curated
Mercuric reductase MerA id=1311321 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mercuric reductase
scnpilot_p_inoc_scaffold_2063_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9199..9513)
DNA (315bp) protein (105aa)
Mercuric transport protein periplasmic component id=1311320 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mercuric transport protein periplasmic protein; K08364 periplasmic mercuric ion binding protein Tax=GWE1_Thiobacillus_62_9_curated
mercuric transport protein periplasmic protein
scnpilot_p_inoc_scaffold_2063_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9527..9883)
DNA (357bp) protein (119aa)
mercury transporter n=1 Tax=Thiobacillus thioparus RepID=UPI000374CD2D
putative mercuric transport protein; K08363 mercuric ion transport protein Tax=GWE1_Thiobacillus_62_9_curated
mercuric transport protein
scnpilot_p_inoc_scaffold_2063_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9994..10398
DNA (405bp) protein (135aa)
Transcriptional regulator, MerR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121W5_POLSJ
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE46677.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaro
scnpilot_p_inoc_scaffold_2063_15
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10408..12717)
DNA (2310bp) protein (770aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:S
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEG1_GALCS
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase
scnpilot_p_inoc_scaffold_2063_16
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12756..13784
DNA (1029bp) protein (343aa)
Transcriptional regulator n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DLF7_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL94379.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillu
bacterial regulatory helix-turn-helix, lysR family protein
scnpilot_p_inoc_scaffold_2063_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13806..14069)
DNA (264bp) protein (88aa)
small protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein id=12498575 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
scnpilot_p_inoc_scaffold_2063_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14066..14680)
DNA (615bp) protein (205aa)
trbI; Conjugative transfer protein TrbI; K03195 type IV secretion system protein VirB10 id=12498576 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
trbI; Conjugative transfer protein TrbI; K03195 type IV secretion system protein VirB10 Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein TrbI
Displaying 18 items

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